BAC Information

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BAC

Clone NameMSMg01-185F01
Chromosome8 (Build37)
Map Location 58,092,637 - 58,092,946
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185F01.T7 (MSMg01no185_f01.b1)MSMg01-185F01.TJ (MSMg01no185_f01.g1)
ACCAG377343AG377344
length769741
length of high quality
(start - end)
323 (64 - 386)289 (94 - 382)
definitionCHROMAT_FILE: MSMg01no185_f01.b1 PHD_FILE: MSMg01no185_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:58 2005CHROMAT_FILE: MSMg01no185_f01.g1 PHD_FILE: MSMg01no185_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:59:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATTTTCGTGNGGTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCTGTGGACTGTATTTTGGGTATTCTGTA
ATTTTTTTTGGCTATTGTCCATTTATTAGTGTACATACCATGCATATCCT
TTCTTCTTTACATGGCTAGCATAGATAGCCAATAGAAAAGAACAGCTATG
TTTTGTAGGTGCCTTGTCTCTTCATGTTGTGTCAAGGCATTTTATTTTTT
ATTTAAAAATATCTTTATTTTTGCTTGTTTTCTTCTTTGCTTTTACTGTA
TAGATACTTTCCACATATATTATGGATACAGATTTATTGCTTGTCTGTGT
TGTCTGAGTGTGAAATGAGTGAGTTCTTTTTTGTCTTCCCCCGCCCCCCT
TTCCTTCCAATATTTTGTCTACTTCCTGTGCATCCCCCCCTGAGTTATCT
TATCTTATCCTACCTTATACTGCATCTTATCATACTCCTTTAACCATTAC
TATCTTCTATATGCCTGCTTGTTCTCTACTCATAAATATATATTATTTTA
TTTCGACCTGCACCTCTTATTGTTTCCATCCTTCCCTTTTTTTCCTATTC
CACTCTCCTATTTCCCAATTTCCAATCCCACTCTTTTCTTATCCCCCTCC
CCTTATCTTTTACCTCCCCCCCCCTTTTCTCCCTCATTCTTTCCTTTCCC
TTCTTCCCTCTTTTTATCCCTCCTTTCTTTCCTCTCTATTCTCCTTTATC
CCCTCTTCTATATCCTATC
CTTCGACCTCCNCCCAACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTG
AGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACACC
AGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAG
GATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTT
GTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACAT
AGTACCACCGGGGGATCCATCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCA
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCATGAGTGAGGTAACACATTCACAAAGGAACTCACACAA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAG
ATATATGATACAATTTCCTAAGCACATGAAACTCAAGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_f01.b1 MSMg01no185_f01.b1 CHROMAT_FILE:
MSMg01no185_f01.b1 PHD_FILE: MSMg01no185_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:59:58 2005
         (323 letters)



>mm_chr8_58092427_58093149
          Length = 723

 Score =  453 bits (234), Expect = e-132
 Identities = 291/312 (93%), Gaps = 8/312 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  gactgtattttgggtattctgtaa---ttttttttggctattgtccatttattagt--gt 69
           |||||||| |||||||||||||||   |||||||||||||||||||||||||||||  ||
Sbjct: 211 gactgtatcttgggtattctgtaatttttttttttggctattgtccatttattagtgagt 270

                                                                       
Query: 70  acataccatgcatatcctttcttctttacatggctagcatagatagccaatagaaaagaa 129
           ||||||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 271 acataccatgcatgtcctttcttctgtgcttggctagcatagatagccaatagaaaagaa 330

                                                                       
Query: 130 cagctatgttttgtaggtgccttgtctc-ttcatgttgtgtcaaggcattttatttttta 188
           ||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 331 cagctatattttggaggtgccttgtctcatt-atgttgtgtcaaggcattttatttttta 389

                                                                       
Query: 189 tttaaaaatatctttatttttgcttgttttcttctttgcttttactgtatagatactttc 248
           |||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||
Sbjct: 390 tttaaaaa-atctttatttttacttgttttcttctttgcttttaatgtatagatagtttc 448

                                                                       
Query: 249 cacatatattatggatacagatttattgcttgtctgtgttgtctgagtgtgaaatgagtg 308
           |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 449 cacatatattatggatactgatttattgtttgtcagtgttgtctgagtgtgaaatgagtg 508

                       
Query: 309 agttcttttttg 320
           ||||||||||||
Sbjct: 509 agttcttttttg 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)