Query= MSMg01no186_j08.b1 MSMg01no186_j08.b1 CHROMAT_FILE:
MSMg01no186_j08.b1 PHD_FILE: MSMg01no186_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:36 2005
(371 letters)
>mm_chr8_116853153_116853924
Length = 772
Score = 429 bits (222), Expect = e-124
Identities = 243/250 (97%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 123 caggagattctacagcactacttgttgcaagacagagaatcaccaacacactactcacta 182
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 572 caggagattctacagcactacttgctgcaagacagagaatcaccaacacactactcacta 513
Query: 183 aaagcaagtccgtggtcagttggaacagtatcttgattcactgcattcttaggctctaac 242
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 aaagcaagtccatggtcagttggaacagtatcttgattcactgcattcttaggctctgac 453
Query: 243 ttgctccagctaggtacaagtaggggacatttaccatcaatggcagcccctcctatccct 302
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 452 ttgctccagctagatacaagtaggggacatttatcatcaatggcagcccctcctatccct 393
Query: 303 cagaaaagatttggcttggacatcctttccaacacagatt-caggtggccatttttggga 361
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 392 cagaaaagatttggcttggacatcctttctaacacagatttcaggtggccatttttggga 333
Query: 362 ccaaaattgg 371
||||||||||
Sbjct: 332 ccaaaattgg 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space: 276206
Effective search space used: 276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no186_j08.g1 MSMg01no186_j08.g1 CHROMAT_FILE:
MSMg01no186_j08.g1 PHD_FILE: MSMg01no186_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:36 2005
(488 letters)
>mm_chr8_116711717_116712604
Length = 888
Score = 882 bits (456), Expect = 0.0
Identities = 480/488 (98%)
Strand = Plus / Plus
Query: 1 aatagtgggtcttcctccttctgaaagttccagagacctctcaaagaccagactcatcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatagtgggtcttcctccttctgaaagttccagagacctctcaaagaccagactcatcgt 260
Query: 61 gtaggaacctcctagtctttgataatgcaaaccatcgagggaggagctctactgatgttt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggaacctcctagtctttgatattgcaaaccatcgagggaggagctctactgatgttt 320
Query: 121 agatccatggttcaggtacaagaggtttttcaaggctgcgaatcctggagcatggggctc 180
|||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 321 agatccatggctcaggtacaagaggtttttcaaagctgagaatcctggagcatggggctc 380
Query: 181 aatgtcattaggagcttcctcccatggccattttcttctgaagtctgtcagccttcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 aatgtcattaggagcttcctcccatggccattttcttctgaagtctgtcagccctcagaa 440
Query: 241 cacaaagagcccggtgaggtctccagtcattcatggaatccaggagcctttcccgatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacaaagagcccggtgaggtctccagtcattcatggaatccaggagcctttcccgatttg 500
Query: 301 tcctcaatccaaatcccagaaatgttctcagtgcccacccctgagctgactgatggtgtc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 tcctcaatccaaatcccagaaatgttctcagtgcccatccctgagctgactgatggtgtc 560
Query: 361 tattctccagtccctggcattccaacctgagaagccttccttccctagggaacattttcc 420
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 cattctccagtccctggcattccaacctgagaagccttccttccccagggaacattttcc 620
Query: 421 accacaatgcaaaagtatccaggccaacgatcataaattcacagcccactgggtgtgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accacaatgcaaaagtatccaggccaacgatcataaattcacagcccactgggtgtgatt 680
Query: 481 tattctcc 488
||||||||
Sbjct: 681 tattctcc 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
