BAC Information

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BAC

Clone NameMSMg01-186K14
Chromosome8 (Build37)
Map Location 44,502,924 - 44,503,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417, Zfp42
Downstream geneAdam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186K14.T7 (MSMg01no186_k14.b1)MSMg01-186K14.TJ (MSMg01no186_k14.g1)
ACCAG378276AG378277
length787766
length of high quality
(start - end)
174 (23 - 196)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no186_k14.b1 PHD_FILE: MSMg01no186_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:43 2005CHROMAT_FILE: MSMg01no186_k14.g1 PHD_FILE: MSMg01no186_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:01:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTACGGTGAGATGGAAGG
CAGAGACAACAGAATACCCACAGATCTGAGGTTGGGTGTCATGGAGAACA
CGGCTGCAAACAACAAAGGACCCTGAATCAAACAAGGTAGAAGAAAAGGA
CCCATTCTTCAGGTTGGCTTTGAGGGGAGGGATATTTGTTTTTGTCTTTT
CCCCTTTTCCTTTAACCTCTCTTTTTTTTTATCTCTATCTTCTATTATTA
TCCTTATTTTCTTCTACTTTCTTCTTTTTTTTTCATTCCCACCACAACCT
TTTTTTTTCACTCCTCCCCCCCTTAAAGAGATAGGTTTTTTTGAGTCCCT
CCCAGACAACCCCCCATATGATTTTTTTTATTGATTTATNATTTTTTTCC
CCCCCCAAAAAAAAAAAAAATTTTTTCTTGGGGGTGTGTGTCCTCTTTTA
TTTTCTTCCTTCTCCTTTTTTTTTCTCTTTCCTTTTATCTCATTTCTTTC
ATTATTAACCTCTCAGTCTTTTTTTTTTATCTATCCTATATTTTCCTAAT
ATCTCTCATTTTTTTTTTTTTTATTTTAAATATCTATCTTCTTGCTTAAT
CTCTTATTAATTTATTTTTTTAATATACTTTTTTTATACCACTTTTCATT
TATTTACCTTCTCTCTTCATCACGTTCTTTTCTTTTCACTTTCCATTGTT
TTCTCTCTCTGTTTTCTATTTTCTCTTATTAATATATTCAACTCATAATT
CTTATTTTTTTTCATATTTCTTTTATATTCTATTCTT
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTGCCTATTCAGTG
ACATTCAGAATTGCCTCTAATATTGTAAGAGAGATAGTGAAAGAAGATCA
GACATTACTATCTACTACATAGAGTTAGAAATCTCAGGGCAAAGTAAGTT
TAGAATTCTTATTATAGTTATTTATGGGAGACCACATTACTTATTAATAG
AAAGTCCCCTCACACTATCACGTAGAATAAAAGCTGAGCCACTCACATAC
ACAGGAATTTACAATGGTTTAGGAAGTAGATCGGGCTGTGATTTGAAGAG
GAACTAGAATATTGTATTATTCTTGCCCCCCCCCCCTAGAGCGGAACTCC
CTAATTAGAACTATGGTTCCCCCGCGAAAAAAAAGATACAGGAGTGTAGA
GAGCTCACACCTGGCTTCTAAGAATATAGCTGACTTTATATTGAGTTGAC
GTTGTCTCAATTGTTTTATTGTCCAGTCCTTGCCTTTATTTATGATTAGC
TATTCTTCTAGCTTAGACATTTATATCCCACATTAGCCTCGTATACGTTT
TCCCTTCTTCTTCTCTCCCCCCTCGTCCTGTTTCTTCGATTTATTATTGG
TTTTGTTAATTAGTCGTTAACGCGCTTGGCCACGTTTTTTTTTTCCTCCT
CTGTGTGTGTGTTCGGGTTTGTATTCCTTTTTTATTTTCCTTACGCCCTA
TCTATTGTGCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_k14.b1 MSMg01no186_k14.b1 CHROMAT_FILE:
MSMg01no186_k14.b1 PHD_FILE: MSMg01no186_k14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:01:43 2005
         (174 letters)



>mm_chr8_44502720_44503293
          Length = 574

 Score =  321 bits (166), Expect = 1e-92
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctacggtgagatggaaggcagagacaacagaatacccacagatctgaggttggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattcctacggtgagatggaaggcagagacaacagaatacccacagatctgaggttggg 311

                                                                       
Query: 65  tgtcatggagaacacggctgcaaacaacaaaggaccctgaatcaaacaaggtagaagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgtcatggagaacacggctgcaaacaacaaaggaccctgaatcaaacaaggtagaagaaa 251

                                                         
Query: 125 aggacccattcttcaggttggctttgaggggagggatatttgtttt 170
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aggacccattcttcaggttggctttgaggggagggatatttgtttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)