BAC Information

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BAC

Clone NameMSMg01-189A05
Chromosome8 (Build37)
Map Location 17,154,350 - 17,154,690
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream geneLOC665638, LOC100040466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189A05.T7 (MSMg01no189_a05.b1)MSMg01-189A05.TJ (MSMg01no189_a05.g1)
ACCAG379841AG379842
length7441,087
length of high quality
(start - end)		577 (59 - 635)---
definitionCHROMAT_FILE: MSMg01no189_a05.b1 PHD_FILE: MSMg01no189_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:52 2005CHROMAT_FILE: MSMg01no189_a05.g1 PHD_FILE: MSMg01no189_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:04:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCCNNATTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAGTCATTTTGGATTTTATTCAGTTGGAATACA
TATGAACTTTTCCTACTGACAGGAGCTGTAGTTTCACTGAAGAGAAAAAA
AAAAGAACACTTTTTAATATTTCCCCTTATTCATGGTACCAGTACACAGG
TCTGTCAAACTCTAAATGGTTTTAAATATGTATTTTATTTTATGAAAATT
TCATACAGTATTATCACAGTGTGTTTGTCATACACAGAAGACACTGTCTC
ATAGCAAATATTCCTAATCTTTTGGCTCTTAAAAATATTTCTGCCCCTTC
TCTCTGTAGGTTTATTTTTATTCTTTTTGTATTAAAATACAACTACTTCA
ATTCCCCTTTCTTTTTTCTTTCTTCATCTTCCCAATGTCCCATCCATTCA
ATCTTTCCACGGCCAACCTCCTTACTTTCAAATTGAAGGCATCTCTTTCT
TTTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTCTG
TCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTG
CGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGNNNNNNNNNNNNNNN
NAGGNNNNNNNNAANNNCGGNTTTTTATATTTTTACGATTTTAAAAATTT
AAAAAATAATTACGATAAATAATAAAATTAAATCGATTATGGAT

TTTTAAAATTCAAAATNTATNCAAAGATTACCGTGGGGGGTTTTTCTCTT
ACACNAAAAAGAGAAAAAAAAGGAAAGGATTGAAAGTATGATTAGTGAGT
TCGAGATAAGGGCGGAGAGTAGCGCAAGGGAGGGGCGCCAATTAAGAAAA
TAAAAAAAGAGGAAAGAAGATGGATAATGGTTATTGTAGATGAGGAATAT
TGTTCACCGCGAGTATAGAGGGAGAGAATAATGAGGAAAGAGATATGGAG
AGGTAGGGAGAGGGAAGAGGAGGTGAGAAAAGGGGAAGGTAAAAAGAGGA
GAAGCATAGAAAAGATAAGATAATAGAGAGATTAGGGTTTGGGGAGGGAG
AGTAAATGATAGGGGAAGAGGGGTGTTAAGATGTTGTTGGGTGGTTAGAG
GAGTAACGTAGAGGTGGTAGGCAGGAGGAGAGAAAAAGGAAGGAAAAAAA
GGAGGGGAGGAAGGGAAGAGAGAAATAAGTTTATATTTAGGAGGATAGTA
AAGTAGGATAATGGTGGTGAGGGGAGAGGAGAAGAGTGTTTTTTTTTATT
TTTTAACCCCCCCCCCCCCCCCCCCGATAGTAGGTTTGGATTAGGGATGA
GGGAGGTAGTGTTTTGTGTTGGTCGGCGCCCGGGAAGAGGNTTGGATTTT
TGGTATAAATATAGGGGCGGGGGGGGGGGGTGGTTTTATTTTTTTATTCT
TAAGCTTAATAAGAATGAATTGAAAGTAATTGGTTGTGGGAATTATGTAA
GAGTTAGAGTATGGAGAAGAAAATAATTATATAAAGGGATAATTACAGTG
TAGAGTAATATGTAGCGGTTAATGGAAGGATTAGGAGGAAGAAAGAGTGA
GTAAGGGAGATATAACGGGAGGGGAGTAGATGGGGCGACAGACGAGGAGA
TGGAGGGTTGGGAATGAGAGGGGGGCGGGGTTGTGTGATAGGTATATAAG
AGAGATGTAAGAATATGAGAACGAGTAGAAAAGAGAGTATAATAATATAT
AAGAGTGTGAGGAAGAGAATAGGGAGTAAGAATAGAAGGACAAGGGGAAA
GAAGACGGTGAAAGGAGAAGGAGAGGTGAGATAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_a05.b1 MSMg01no189_a05.b1 CHROMAT_FILE:
MSMg01no189_a05.b1 PHD_FILE: MSMg01no189_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:04:52 2005
         (577 letters)



>mm_chr8_17153945_17154921
          Length = 977

 Score =  555 bits (287), Expect = e-162
 Identities = 335/363 (92%), Gaps = 22/363 (6%)
 Strand = Plus / Plus

                                                                       
Query: 206 tcacagtgtgtttgtcatacacagaagacactgtctcatagcaaatattcctaatctttt 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tcacagtgtgtttgtcatacacagaagacactgtctcatagcaaatattcctaatctttt 465

                                                                       
Query: 266 ggctcttaaaaatatttctgccccttctctctgtaggtttatttttattctttttgtatt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggctcttaaaaatatttctgccccttctctctgtaggtttatttttattctttttgtatt 525

                                                                       
Query: 326 aaaatacaactacttcaattcccctttcttttttctttcttcatcttcccaatgtcccat 385
           |||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 526 aaaatataattacttcaattcccctttcttttttctttcttcatcttcccaatttcccat 585

                                                                       
Query: 386 ccattcaatctttccacggccaacctccttactttcaaattgaaggcatctctttctttt 445
           ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||
Sbjct: 586 ccattcaatctttccacggccaacctctttactttcaaattgaaggcatct--ttctttt 643

                                                                       
Query: 446 ctctctctgtctctctctgtctctctctgtctctctctgtctctctgtctgtctgtctgt 505
           || |||||||||||||||||||||    ||||              ||||||||||||||
Sbjct: 644 ctttctctgtctctctctgtctct----gtct--------------gtctgtctgtctgt 685

                                                                       
Query: 506 ctgtctctctctctctctctctctctctctctgtgtgcgtgtgtgtgtgtgtgtgtgtgt 565
           ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 686 ct--ctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 743

              
Query: 566 gtg 568
           |||
Sbjct: 744 gtg 746



 Score =  105 bits (54), Expect = 1e-26
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                 
Query: 152 ctctaaatggttttaaatatgtattttattttatgaaaatttcatacagtatta 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctctaaatggttttaaatatgtattttattttatgaaaatttcatacagtatta 54


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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