BAC Information

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BAC

Clone NameMSMg01-190M13
Chromosome8 (Build37)
Map Location 84,038,893 - 84,039,171
singlet/doubletsinglet
Overlap genenone
Upstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190M13.T7 (MSMg01no190_m13.b1)MSMg01-190M13.TJ (MSMg01no190_m13.g1)
ACCAG381009AG381010
length751704
length of high quality
(start - end)
356 (394 - 749)280 (75 - 354)
definitionCHROMAT_FILE: MSMg01no190_m13.b1 PHD_FILE: MSMg01no190_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:10 2005CHROMAT_FILE: MSMg01no190_m13.g1 PHD_FILE: MSMg01no190_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGAGGAATACCGAATGGTGGAGAAGCACT
TGAAAAAATGTACAACATCCTTAATCATCATGGACCCTGCAAATCAAAAC
AACCCTGAGTTTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTC
CATTGCTGGTGGGATTGCAAGCTAGTACAACCACTCTGGAAATAAGTCTG
GCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCACAATAC
CTCTCCTGAGCATATATCCAGAATATGTTCCAACTTTCATGAAGGACCCA
TGCTTCACTATGTTCATAGCAGCCTTATCTATAATAGCCAGAAGCTGGAA
AGAACCCAGATTCCCCTCAACAGAGGAATGTATACAGAAAATGTGGTACA
TTTACACACTGGAGTACTATTCAGCTATTAAAAAGAATGAATTTATGAAA
CTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAAC
CCAATTACAAAAGAACTCGCATGATATGTTCTCACTGATAAGTGGATATT
AGCCCAGAAACTTAGAATACCCAAGATATAGGATACAATCTGCTAAGCAC
AGGAGACTCAGGAGGAAGGAAGACCAGGGTGTGGATGGTTTGCCCCTTCT
N
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTCCCTTCCTCTTTTGCAAAGGT
ATCACAGACACATTGAAGTCCCCGTGACAGAAAGGTTACTTTTCCCTCTG
AGCTATTTCACCAGGCTTTGATAGAAATGTGGTGACATTGCAACTGCTGA
TAACATCAGGATAAGAAGAGGGTGGTGATGGTCCCATTGTCCTTGATGTC
TGGTGATGAATCTGGGCACATGATTCCTCTTAAGTGCTTATCCCTGTTCG
GTTCTGCAGGTCAGCTGAGCCTCATATACAGGACAGAATGCATCATTATC
TATTTTTTTTTGACCCCCCCCCCTGACAAAAGACAAGTCACTTTCTATAA
ACCCCTTTCTCGGAATTGACAAAAAATATCTTTGAGGGAAATGTGGCTGG
TGTGTTGCTGGGGTGTCTGAGCTCATTTCTTAGTCCTGGCTGTGCTATGT
GAAGAGCTCACTGTCATCACTGCCCAGAATGGAAAGGGGATGCTGGGATG
TGTTTTAAGAGTTTAAATTAACTTCTCTAATGAAGATGAAGCAGCCAGGG
GAGGCCCTCTAGGTTGAGAGGAGGTGACCACTTACCTTTCCTTCTCTGGC
CCTTCTGCCATTTCTCCAGCTGCTCTCTGCAGGAGAGCTCTGATTTCTTA
CAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_m13.g1 MSMg01no190_m13.g1 CHROMAT_FILE:
MSMg01no190_m13.g1 PHD_FILE: MSMg01no190_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:10 2005
         (280 letters)



>mm_chr8_84038693_84039372
          Length = 680

 Score =  540 bits (279), Expect = e-158
 Identities = 279/279 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttcccttcctcttttgcaaaggtatcacagacacattgaagtccccgtgacagaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttcccttcctcttttgcaaaggtatcacagacacattgaagtccccgtgacagaaag 260

                                                                       
Query: 61  gttacttttccctctgagctatttcaccaggctttgatagaaatgtggtgacattgcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttacttttccctctgagctatttcaccaggctttgatagaaatgtggtgacattgcaac 320

                                                                       
Query: 121 tgctgataacatcaggataagaagagggtggtgatggtcccattgtccttgatgtctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctgataacatcaggataagaagagggtggtgatggtcccattgtccttgatgtctggt 380

                                                                       
Query: 181 gatgaatctgggcacatgattcctcttaagtgcttatccctgttcggttctgcaggtcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgaatctgggcacatgattcctcttaagtgcttatccctgttcggttctgcaggtcag 440

                                                  
Query: 241 ctgagcctcatatacaggacagaatgcatcattatctat 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagcctcatatacaggacagaatgcatcattatctat 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)