BAC Information

Click to search

BAC

Clone NameMSMg01-190O21
Chromosome8 (Build37)
Map Location 72,161,904 - 72,162,262
singlet/doubletsinglet
Overlap genenone
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175
Downstream geneEG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190O21.T7 (MSMg01no190_o21.b1)MSMg01-190O21.TJ (MSMg01no190_o21.g1)
ACCAG381111AG381112
length752711
length of high quality
(start - end)		359 (394 - 752)280 (73 - 352)
definitionCHROMAT_FILE: MSMg01no190_o21.b1 PHD_FILE: MSMg01no190_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:21 2005CHROMAT_FILE: MSMg01no190_o21.g1 PHD_FILE: MSMg01no190_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAAACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACAAATTTCTTTTCTTTTCTTTGTTTTTCAAGACAA
GGTTTCTCTGTCTACCCCTGGCTGTCCTGGAACTCTATTCTGTAGAGCAG
GCTGACCTCGAATTCAGTGATCTGCCTGCCTCTTGCCTTCCAAGTGCTGG
GATTAAAGGCGTGCACCACCATTGCTAGGCAAGCTCCCCAGATTTTTTTT
TCTTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGG
AACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCT
CTGCCTTCATGTGCTGGGATTATTTTTTTTGCGCCACCACTGCCTGGCAC
TCCCCAGATTTCTACTCTCTGTGAAAATTTCCCTTTGACATAAACCTTCC
AGGATGTTCCAGAGAGGGGCTGTAACGCCACAAACAGCCTCATAAAATGA
TTCTCTTAACTGTTTAAAGAATCTAGGGATTCTATCATAGAACCCCAAAT
CTCCTACGTTGCTGCTATAGATCAATTCTATAAAACCAAGAATATCACAC
ACTAGTTTCTCACAGTAAAGACTCCAGTCCTCTGCACCAATTTTCTGTTA
CAATTACTCTTTTCTTTGCTGTGACCAAATAACTGAAAAAAGCATCTTCC
AAAGGGAAGGGTTTAATCTGGCTCCAGTCTGCTGCTGTAAGGGGCTGTGC
TT

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACTGAGGAGAGGCCCTGTGAGTGTAA
ACAGTGTGGGAAAACCTTTAGATATAGCAGGGCCCTCAAATTACATGAAA
GAATTCATACCGGAGAGAAGCCCTATGAATGTAAACAATGTGGGAAATTT
TTCAGAAGTCACAGGACCCTTAAGTTACATAAAAGAATTCATACTGGAGA
AAAACCCTATGAGTGTAAAGAATGTGGGAAAGCTTTTAGATGGCTTACTT
CTCTGAAGTTACATGAAAAGATTCATACTGGAGAAAAACCGTATGAATGC
CAATAGGGGTGGAACCANTACAGGGGCCCGGCGTCCTATCATAGACATAA
AATAACTCATGGTGGAAAAAAAAAAAAAAAATGTAAGGAGTGTGGGAAGT
CCTTCATTTATCCCTCTTTACTTCAAGTGCATGAAAGAACTCACACTGGT
GAAAAGCCCTTTGAGTGTAAGCTCTGCGGTAAAGCCTTTAGGTGTCAGTC
CTCGCTTCGACTGCACGAGAGAACACACACAGGAGAAAAACCCTATGAGT
GTAAGCACTGTGGCAAAGCCTTTTCAAGTTACAATTACCTTCGATTTCAC
GAACGAAGCCACACTGGAGAGAAACCCTATGAATGTAAGGAGTGTGGTAA
AACTTTCCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_o21.b1 MSMg01no190_o21.b1 CHROMAT_FILE:
MSMg01no190_o21.b1 PHD_FILE: MSMg01no190_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:21 2005
         (359 letters)



>mm_chr8_72161704_72162462
          Length = 759

 Score =  671 bits (347), Expect = 0.0
 Identities = 356/359 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggcactccccagatttctactctctgtgaaaatttccctttgacataaaccttccagg 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 201 ctggcactccccagatttctactctctgtgaaaatttccctttgtcatagtccttccagg 260

                                                                       
Query: 61  atgttccagagaggggctgtaacgccacaaacagcctcataaaatgattctcttaactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttccagagaggggctgtaacgccacaaacagcctcataaaatgattctcttaactgt 320

                                                                       
Query: 121 ttaaagaatctagggattctatcatagaaccccaaatctcctacgttgctgctatagatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaagaatctagggattctatcatagaaccccaaatctcctacgttgctgctatagatc 380

                                                                       
Query: 181 aattctataaaaccaagaatatcacacactagtttctcacagtaaagactccagtcctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattctataaaaccaagaatatcacacactagtttctcacagtaaagactccagtcctct 440

                                                                       
Query: 241 gcaccaattttctgttacaattactcttttctttgctgtgaccaaataactgaaaaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaccaattttctgttacaattactcttttctttgctgtgaccaaataactgaaaaaagc 500

                                                                      
Query: 301 atcttccaaagggaagggtttaatctggctccagtctgctgctgtaaggggctgtgctt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttccaaagggaagggtttaatctggctccagtctgctgctgtaaggggctgtgctt 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |