BAC Information

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BAC

Clone NameMSMg01-191K10
Chromosome8 (Build37)
Map Location 67,117,609 - 67,117,894
singlet/doubletsinglet
Overlap geneCpe
Upstream geneLOC384831, EG244495, Tll1, LOC100040989
Downstream geneSc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191K10.T7 (MSMg01no191_k10.b1)MSMg01-191K10.TJ (MSMg01no191_k10.g1)
ACCAG381592AG381593
length833748
length of high quality
(start - end)
272 (104 - 375)287 (58 - 344)
definitionCHROMAT_FILE: MSMg01no191_k10.b1 PHD_FILE: MSMg01no191_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:21 2005CHROMAT_FILE: MSMg01no191_k10.g1 PHD_FILE: MSMg01no191_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCACCCCTAATTACACCCTTTCCCCCTCTTATATCCACNNTGAGATA
ANNNTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATATATATCTATCACCATAAGTCATTAAAGAACATT
TTTTGTTACCCAGTAAAACCATTCCTGCTTCCCTAGCTGTCCCCTCTCCT
CCCCAGCCCCCAGTAACTGCTACTTCCTGTCACCATGTATATTCCTCTCT
TCTAGACATTTTATGTAAATTAAATCATATTGTGCGCTTATGACTCTGGC
TTGACTCATTTAGCATGTTGTTTTTAATGTCATTTCTGGTATATATTATT
ACTTCGTCCATGACGTCGCGTTAGTGCACCATAGCTGTTTCTCGTCAGAT
ATTTCATTGCATTCTGTATTGTATTCCCCCCCGCCCCTTGTTTTATAAAT
GTATTTGGGTGCTTTGTCTTCATGCTAGAAAACATAATCAATGTGTATAT
CTGTGCCCATGCATGCCATAATAGGGTATCTTATCCCCTACAACTGACGC
CTTATATTTTTGTGATACGTCCTGAGTATGCTACAAATCAAACACGCCTC
TCCCTGCATCACCATTTCTTCATTCTTTTTGTATGACACCCCATGCATAA
CTCCTTTTCCCCTCTTTGTATTCTTCAGATATAAACTCACCCTTCCCAAT
AACTGACAATTTTCCCCTCCTTCCCTGATCGGTTTTTTCTCCCTGATATT
TCTTACTATTCCGACTCTTCTATATAACAATCCTGTAACAGTTCTTAACT
CTGTTATACCCTCTATACTATCATTCTTCTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTTAATAGGCCAGGTTGGCCTCAAACTCAAAGCTATCCTCCT
GCCTTAACCACCCAAGTGCTAACCACCATGTCTAGCCTGTCCTTGTTAAT
GTTTTACAAAATCTTGTTCTATAGTAAGAACATTACATTTCTGTTTGTCA
TACAGTCTTCAAATGTTTTCTCTAAATTGATTTCTCTTTTGTCATGCATT
TTTCCACATAGAAGCTCATAATTTGTTAATGAAAACCATCCAATTCTTTT
CTTAAGTGGCATCTGGGTGCTTTCTCTCTTTAAAAGAAAAATTTTTCTTT
TACCCCCCCCCCCTCCATTGTATTTTAATTTTCAAATTCACAACTTTGTG
CCATCATGTGTAGAAAGGCGGGGTGTACAGTGCAACTGTAATTCTGTTAT
GCCCACTTCCTTTTTCCTGATTTCCTTCCCTACTGTGACCATATCTTTTC
TTTTCTCCCCCTTTACTTCACATTGCCCCACATTCATCTTTTTCACTTCT
TACGATACATTTTTCAAATCTTATGTTTACCCCTCTCTACTCCTCCCTAC
CCATTTGTAACAATCCCCTGTTATCTTTCTTATATTTCTCGATTTCCTTT
TTTCCTTTTCTCTCTTATCTTCCCTTTTATCATCTCCCTCTTTTTATTTT
TCTTTCCTATTCTTCCATATATAGCTACAATTTCACCTTCTATATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_k10.g1 MSMg01no191_k10.g1 CHROMAT_FILE:
MSMg01no191_k10.g1 PHD_FILE: MSMg01no191_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:21 2005
         (287 letters)



>mm_chr8_67117409_67118095
          Length = 687

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttaataggccaggttggcctcaaactcaaagctatcctcctgccttaaccacccaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttaataggccaggttggcctcaaactcaaagctatcctcctgccttaaccacccaagt 260

                                                                       
Query: 61  gctaaccaccatgtctagcctgtccttgttaatgttttacaaaatcttgttctatagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaaccaccatgtctagcctgtccttgttaatgttttacaaaatcttgttctatagtaa 320

                                                                       
Query: 121 gaacattacatttctgtttgtcatacagtcttcaaatgttttctctaaattgatttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacattacatttctgtttgtcatacagtcttcaaatgttttctctaaattgatttctct 380

                                                                       
Query: 181 tttgtcatgcatttttccacatagaagctcataatttgttaatgaaaaccatccaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtcatgcatttttccacatagaagctcataatttgttaatgaaaaccatccaattct 440

                                                         
Query: 241 tttcttaagtggcatctgggtgctttctctctttaaaagaaaaatt 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttaagtggcatctgggtgctttctctctttaaaagaaaaatt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)