BAC Information

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BAC

Clone NameMSMg01-192L11
Chromosome8 (Build37)
Map Location 34,377,822 - 34,378,224
singlet/doubletsinglet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192L11.T7 (MSMg01no192_l11.b1)MSMg01-192L11.TJ (MSMg01no192_l11.g1)
ACCAG382300AG382301
length1,2541,259
length of high quality
(start - end)
417 (29 - 445)327 (70 - 396)
definitionCHROMAT_FILE: MSMg01no192_l11.b1 PHD_FILE: MSMg01no192_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:28 2005CHROMAT_FILE: MSMg01no192_l11.g1 PHD_FILE: MSMg01no192_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCTCACTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
CATTCCCCCACCGCCATGGTTAGCGGAAGACAGCCTACGTGCAAAGAATC
TGTAGTAGTTACTAAGACACTAACAAAACAAGAAGGCATATTTGTGCCCA
TTTGCCAGTGGGACGGGTGTGCATGTGTATGTGCGTGTAGCTTTAGTGAG
AAAAAATTTAGGAATCAGACTCATTTATTAACTCTAAGTATATCTTTGTT
TTATAAATCATTTGGCTTCAAGCCAAAACAAGCATAAAAACAAAAATTAC
TTTATGAGATACTTCTTTGTTGTTCAAGAAATCATACAGATCCTCTCTTT
ATTCCAGTCACACACGTTCTCCTAGTAGTTTGTGGTTTTTTACACGTGTC
TTGCAAATAAAAAACTTTAAGCCAGGATTTGCCTCCAAGTGGAATGTTAT
TTTTCCACCCCCCCCTCAAAAACAAACCTGCTTGAAAAATAATCGAGCTG
GGTTTTGATTAGAGGAATGTTGCGTCGTTTCTGGAGATACAGGATTAGAA
CTGAAAAACATCAAAATTAAAATATCCCCGAAGTTAAAATGTAATCATCT
AATTTATGAGTCATTACTCTCAGAAAAGCAGAGATTATATTACCCTTTAA
GATCTGTTATCTTTAAAAAAAATTTTCTCTCAGAAGAAAAGGTTTCAAAC
AAAACAAAACAAAAAACGGATGCACAATCAATAATTATTTGCAGTGATAC
TGATACACAGGCAGCAAGCATATTAGCTTCCTACGCCTACAGGAGGGAGG
TATGGTTCACTAATTCTTTACCATCAAGCCCATGAAGCCCTGTGCATGAG
CAAAAACCTTGCTGGTTCTGCCTTTTATTCTATACGGCCATGAGGTGAAC
TGTCATTCATATAAATTCTCTAATCATTTTCATACTGTAACAAAAATACA
GAACATACACTTTTTTAAATAAATTTTTAACTCCTTTTGCTTTCGTCCCC
ATCGTATTGCTCAAATTCCTCAAAAATTGCTCACATACTCTTTATAGTGG
TTGCCTTTACTCCACCCCTGTTTTAACAAAATCTTTACTTCTCTTTTCTC
CTTTCCCTCTTCTCACCTTTTTAATTTACTCATTGACACTCTCCTCTTAA
AATAATACACTTCCCCTTTTATCTCCTAATTTCTCTTCTCATTTAACTCT
CATATTCTTTGTCTTCTTATTTATCATTTTCCTTCTTCTTATCTCTAATT
ATAA
NNNTTCTCATGGTAGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGAACTTGTGATACTTTCTGTTTAGTTTAA
GATTAAAATTGCAGTTACTATGTAGTGGGTAAAGGTGCTTGCTTTGCAAG
CCTGACAGCCTGGCTCAGGGTTCAGCCTCTGTGTGATGTAGGAGAGAAGC
ACACCAGAGCATCAGTAACACTGTCAAGCCTTGGTGCCTCTCATGAGCTG
GATCCCAAGTTGGGCCTGTCATTCCTTTTCCCCAGGCTCTTCTCCATATT
TTTCCCTGCAGTTCCTTTAGACAAGAACAATTCTGAGTCAGAGTTTTTGA
CTGTGGGATGGCAACCCCATCCCTCCACTTGGTGCCCTGTCTTTCTTTTG
TAGGTGGACTCTACAAGTTCCCTCTCCCCACTTTTGAGNATTTCTTTTTT
TTTCCCCCCCCCCCCGNNNTGAGTCTCTCTCACCAAAAAGAGGGGGGGTT
CTTTCTATAGTTTCCCCCCCTTTCCTAGCCCCTGACTTTGCTTTGGTTTT
ACCAAATATTTTGTAAACTTCTTGTTGTTCAAATTTTATTTACTTCTTTT
ATGAGTTTTGTCCCCAGCTATCTGTCTCGCCGTCATTTAACCTCCTTGTC
TACCCTGTTTCCTTCCTGCCCCTGTTTTTATCTGTTTCCTAATGATCGCA
TTTCCCAACCTCTTTTTTTGTTTCTTTTTATCATTCTCCTCTCACTTGAT
TCTTCTACACTTTGACTGTGTCTTGTTCTTCTCCTAAATCTACTTCCTTT
CCCTACTCCTTTTTTTTTTATTCCCTCATATCTTCTCCTTCTCTTTCTTT
TTATCTCTTTCTTATCTTCTCCTTTTTTTTCTTATGTTCCTTTTTTTTAA
TCTTTTTCTTCTTTTTTTTCTTCTTCTCTTTCTTTTTTCTTATTTTTCTT
CTCTCCTTTCTTCTTTTTTCTTTATTTATATCTATTTTCTTCTCCTTTTT
TATTCGTTCTTCCTCTCTTTTCTTTTTTCTTCTCCTGCTTCTTCTTTCAT
CTCCTTTTTCTTCTTCCCTTCTCTCTCCTCTCTTCTTTCTTATCTTACTT
TATATCTTCCACACCTTTCTTCCTTCTCCTTTCTATTTTTTCTCTTTCCT
CTTCTTTCTTTATCTCTTCCACCTCTCTATCTTTCTATTTTCTTCATTCT
TCTCCACTTTCCTTGTCTCTATCTTTTCTCTTTTACCTCTTTATCTAACC
TCTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_l11.b1 MSMg01no192_l11.b1 CHROMAT_FILE:
MSMg01no192_l11.b1 PHD_FILE: MSMg01no192_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:28 2005
         (417 letters)



>mm_chr8_34377607_34378424
          Length = 818

 Score =  764 bits (395), Expect = 0.0
 Identities = 401/403 (99%), Gaps = 1/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattc-ccattcccccaccgccatggttagcggaagacagcctacgtgcaaagaatctg 74
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcaccattcccccaccgccatggttagcggaagacagcctacgtgcaaagaatctg 275

                                                                       
Query: 75  tagtagttactaagacactaacaaaacaagaaggcatatttgtgcccatttgccagtggg 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tagtagttactaagacactaacaaaacaagaaggcatatttgtgcccatttgccagtggg 335

                                                                       
Query: 135 acgggtgtgcatgtgtatgtgcgtgtagctttagtgagaaaaaatttaggaatcagactc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acgggtgtgcatgtgtatgtgcgtgtagctttagtgagaaaaaatttaggaatcagactc 395

                                                                       
Query: 195 atttattaactctaagtatatctttgttttataaatcatttggcttcaagccaaaacaag 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atttattaactctaagtatatctttgttttataaatcatttggcttcaagccaaaacaag 455

                                                                       
Query: 255 cataaaaacaaaaattactttatgagatacttctttgttgttcaagaaatcatacagatc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cataaaaacaaaaattactttatgagatacttctttgttgttcaagaaatcatacagatc 515

                                                                       
Query: 315 ctctctttattccagtcacacacgttctcctagtagtttgtggttttttacacgtgtctt 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 516 ctctctttattccagtcacacacgttctcctagtagtttgtggttttttacacgtgtcat 575

                                                      
Query: 375 gcaaataaaaaactttaagccaggatttgcctccaagtggaat 417
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcaaataaaaaactttaagccaggatttgcctccaagtggaat 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 818
Length adjustment: 9
Effective length of query: 408
Effective length of database: 809
Effective search space:   330072
Effective search space used:   330072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)