Query= MSMg01no195_d12.b1 MSMg01no195_d12.b1 CHROMAT_FILE:
MSMg01no195_d12.b1 PHD_FILE: MSMg01no195_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:22 2005
(602 letters)
>mm_chr8_115143560_115144561
Length = 1002
Score = 1052 bits (544), Expect = 0.0
Identities = 580/598 (96%), Gaps = 10/598 (1%)
Strand = Plus / Plus
Query: 5 gaattctttatatttactttattctaaaataataatattaatatatttaatagtcaatgc 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatatttattttattctaaaataataatattaatatatttaatagtcaatgc 264
Query: 65 ctcagatggcagttgataaatgagaagtgaattgtgtgtagagttgaataatttgaaacc 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagatggaagttgataaatgagaagtgaattgtgtgtagagttgaataatttgaaacc 324
Query: 125 taagggaaggagtgcctcagcacagatggtgtgagtctggaatgcacctgaggtctgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagggaaggagtgcctcagcacagatggtgtgagtctggaatgcacctgaggtctgtgg 384
Query: 185 ctagagatgaggctcatgaactacaatggctgagtttgcactcttaggggaagcttgtag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagagatgaggctcatgaactacaatggctgagtttgcactcttaggggaagcttgtag 444
Query: 245 agatacacagaataaaagatattgtcatattttcctctgtaccaacttcttccccatcat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agatacacagaataaaagatattgtcatattttcctctgtaccaacttcttccccatcat 504
Query: 305 tccagattctaacatgccaagaaaggctttgacatatggagctgtaagaatttcacacct 364
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccagattctaatgtgccaagaaaggctttgacatatggagctgtaagaatttcacacct 564
Query: 365 tcagactcatctaggctctgccacatgatatatcttattggctatggttaattttctgcc 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcagattcatctaggctctgccacatgatatatcttattggctatggttaattttctgcc 624
Query: 425 ctgtgttttaattatctttagtacgagcccttccctctcctcctcctatcttctcttatt 484
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtgttttaattatctctagtatgagcccttccctctcctcctcctatcttctcttatt 684
Query: 485 ctccctttctttcctctcccttcccttcgtccttccctcacctatgtctgtctatgtctg 544
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 ctccctttctttcctctcccttcccttcctccttccctcacctatgtctgtct------- 737
Query: 545 tcttcctttcactcctttcttctccccctctctcccctcccattcccttctcttggaa 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ---tcctttcactcctttcttctccccctctctcccctcccattcccttctcttggaa 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_d12.g1 MSMg01no195_d12.g1 CHROMAT_FILE:
MSMg01no195_d12.g1 PHD_FILE: MSMg01no195_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:22 2005
(467 letters)
>mm_chr8_115228797_115229663
Length = 867
Score = 704 bits (364), Expect = 0.0
Identities = 401/418 (95%), Gaps = 10/418 (2%)
Strand = Plus / Minus
Query: 58 agtaagatttttaaatatggtttttggttgtttcgtttatttgttttcctattgaaaggg 117
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agtaagatttttaaataaggtttttggttgtttcgtttatttgttttcctattgaaaggg 808
Query: 118 ggaatgctaagtaaaagcttgactttgggagagaatctgagtgtgatgtttcagcagtaa 177
|||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
Sbjct: 807 ggaatgctaagtaaaagcttgactttgggagagaatctcaatgtgatgtttcaggagt-a 749
Query: 178 aagatagatagatagatagatagatagatagatagatagatagatagatagatagataga 237
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 748 aagatagatagatagatagatagatagatagatagatagatagatagacagatagataga 689
Query: 238 t--------agatagataatctccatatcaaaataagattttgacattcatgcttgctaa 289
| |||||||| ||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 688 tagaaagaaagatagat-atcgccatatcaaaatgagattttgacattcatgcttgctaa 630
Query: 290 ggccatttcccatgcttacagaaattaaaatctctgtgacagaacagtaagctctaatgc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ggccatttcccatgcttacagaaattaaaatctctgtgacagaacagtaagctctaatgc 570
Query: 350 taaggacatatttctcaggtgaggcaagcagcagaaagcattgtttcacagcgaggtaca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 taaggacatatttctcaggtgaggcaagcagcagaaagcattgtttcacagcgaggtaca 510
Query: 410 aagcagaggcaggataaagactccaggtcccttcctctcagcacagcatctgccacag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aagcagaggcaggataaagactccaggtcccttcctctcagcacagcatctgccacag 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
