BAC Information

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BAC

Clone NameMSMg01-197D19
Chromosome8 (Build37)
Map Location 53,284,904 - 53,285,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872, LOC100040220
Downstream geneLOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197D19.T7 (MSMg01no197_d19.b1)MSMg01-197D19.TJ (MSMg01no197_d19.g1)
ACCAG385052AG385053
length715706
length of high quality
(start - end)
670 (46 - 715)67 (77 - 143)
definitionCHROMAT_FILE: MSMg01no197_d19.b1 PHD_FILE: MSMg01no197_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:03 2005CHROMAT_FILE: MSMg01no197_d19.g1 PHD_FILE: MSMg01no197_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTATCCTACTTCACAAATATTTACTCAGCAATATTTTTGCTCTA
TTCACAATAACTAGCAATCAGAAAGAAACTAAGTGTTTTTCAGCCAAAAA
TGCATAATGAGAATGTAATATACGTACACTATTTGAACAGAAAAAAAATA
AAATTAAAAATTGCATCTTAGTCAGTGGAACTAGAAAAGACAATGTTGAG
TGAAATAATTCAGACATAGAAAAATTAATGTTCCGTATTTTCTCTCATGT
GAGGTCCCTAGCTCTGAAATCTTCTGATTTCAACATATTGAAGAACATTC
AGATAGCCCACCTTTTTTCAAGGCAATATATTTTTCTCACTCCACATGAT
TTCAGTTAGCAATTTCTACCAACTTAACTATGTGTTTTTTCCCCATTTCT
CCAATAATGATCTAACCCATGCCTTATTACTTCAGGAAACTATTTAATTT
TGAGTACATGCTTTTAATTTCTCTCCATGCTGCTTCTCTTTATCATAAGT
ATCATTTTGAAAACTTGCATTTAATGTGCTTGCATTATGTAATAGGCACT
AGTTATGTGAAATATACAAGATTTGTATCCATTGCTTCACATAATCATCC
CCTAAAATGACTTACAGGTTAAAGCCAAATTGTCATCTTTAGGTCATCTA
TTTAGTACATATACT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTATGTGATATACATAAAGTCC
TTCTATAAAACTGAATATTTTTTCCGCCGTGTGACTAGATAGNTGTACCA
NNATAAATACTTAANNNGTACCAAATGGGGTTTGCATTTTTGCCCAAATA
GGTAAAGTTAAAGGCCCTAAAGGAAAAGGGGATTTTCCTGGGAATTTTTA
AAAACCATTACTTAATTTTTTTAGGGAAATAAGGGAAAAACTTTTGAACT
GGAGGGGGGTGTAAATTTTCCCAAGTAATTTTTACCAAACAATTTTTCAA
CAAAAAAACCCTTGGGAAAAATGTGGTTTTTTTTTATTCCCCCCCCCCAC
CCCGGGGGGGATTTTCCAAAAAAAAAAGGGGTTTTTTGACCCCCCCAAAA
AAAAAAAAAAACCGGGTTTTTTTTCTTCTGTTGTTTCTTCAAAAAAAAAC
CCCCCCCCCAATAAAACTGTTTATATAAAAAAAAACACCCCCCGCGGGAA
AAAAAATATTTTTGGTAAAAAAAAACCAGGGGGGGGGGCCCCTTCTTCTT
ATAATAAAATAAAAAGAGGGGGGGGTGTTTTCTTTAAAAAAAAACCCTCT
TTCCTTCCGGAGTTTTATATATTATAGGGGGGGGGGATAATTTTTTTTTT
TTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_d19.b1 MSMg01no197_d19.b1 CHROMAT_FILE:
MSMg01no197_d19.b1 PHD_FILE: MSMg01no197_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:03 2005
         (670 letters)



>mm_chr8_53284425_53285495
          Length = 1071

 Score = 1075 bits (556), Expect = 0.0
 Identities = 583/592 (98%), Gaps = 1/592 (0%)
 Strand = Plus / Minus

                                                                        
Query: 80   gaaactaagtgtttttcagccaaaaatgcataatgagaatgtaatatacgtacactattt 139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 gaaactaagtgtttttcagccaaaaatgcataatgagaatgtaatatacgtacactattt 1012

                                                                        
Query: 140  gaacagaaaaaaaataaaattaaaaattgcatcttagtcagtggaactagaaaagacaat 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gaacagaaaaaaaataaaattaaaaattgcatcttagtcagtggaactagaaaagacaat 952

                                                                        
Query: 200  gttgagtgaaataattcagacatagaaaaattaatgttccgtattttctctcatgtgagg 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  gttgagtgaaataattcagacatagaaaaattaatgttccgtattttctctcatgtgagg 892

                                                                        
Query: 260  tccctagctctgaaatcttctgatttcaacatattgaagaacattcagatagcccacctt 319
            |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 891  tccctagctctgaaatcttctgatttcaacatattgaagaaccttcagatatcccacctt 832

                                                                        
Query: 320  ttttcaaggcaatatatttttctcactccacatgatttcagttagcaatttctaccaact 379
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 831  ttttcaaggcaatatatttttctcactccacatgatttcagttagcaatttctatcaact 772

                                                                        
Query: 380  taactatgtgttttttc-cccatttctccaataatgatctaacccatgccttattacttc 438
            ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 771  taactatgtgttttttttcccatttctccaataattatctaacccatgccttattacttc 712

                                                                        
Query: 439  aggaaactatttaattttgagtacatgcttttaatttctctccatgctgcttctctttat 498
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  aggagactatttaattttgagtacatgcttttaatttctctccatgctgcttctctttat 652

                                                                        
Query: 499  cataagtatcattttgaaaacttgcatttaatgtgcttgcattatgtaataggcactagt 558
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  cataagtatcattttgaaaacttgcatttaatgtgcttgcattatgtaataggcactagt 592

                                                                        
Query: 559  tatgtgaaatatacaagatttgtatccattgcttcacataatcatcccctaaaatgactt 618
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 591  tatgtgaaatatacaagatttttatccattgcttcacataatcatcccctaaaatgtctt 532

                                                                
Query: 619  acaggttaaagccaaattgtcatctttaggtcatctatttagtacatatact 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  acaggttaaagccaaattgtcatctttaggtcatctatttagtacatatact 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)