BAC Information

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BAC

Clone NameMSMg01-198C15
Chromosome8 (Build37)
Map Location 34,367,534 - 34,367,830
singlet/doubletsinglet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C15.T7 (MSMg01no198_c15.b1)MSMg01-198C15.TJ (MSMg01no198_c15.g1)
ACCAG385605AG385606
length1,331742
length of high quality
(start - end)
---297 (440 - 736)
definitionCHROMAT_FILE: MSMg01no198_c15.b1 PHD_FILE: MSMg01no198_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:18 2005CHROMAT_FILE: MSMg01no198_c15.g1 PHD_FILE: MSMg01no198_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTCTTTTTTATTTTCTTATTNAATACCCCCNCTAANA
CATTCTCTAATTCATCTTATACACTCACACCTTCTCTTNNNNNNNGGGGC
CTCCTAATAAAATTTGTCGTGGCCGCCCTTAATTACGTCACCTTCTACTT
ATTAGGGTCCAAGAAGAGAAATCCCGCCCGGGGTAAATTTTCCCCACTTT
GGAGGGTATTATTGCGCCCCCTGGGGCTTCCCCCCCTGTGGGTACACTGG
TAAATTCTTGTGTTTTCATAAAAATTTCTCCCCTTATTGGGGGATATTAT
TATTGGGAATATATGGGCATTTTCCCCCCTTGTGTTTAACCCCCCCCCCC
TCACTTGTTTGTTTTTAAAAAAATTTTCCACACCCTTTTGGGGGGTTCTT
ATATATTTTGTTGATATTCGGGGTCCCTTCTCTCCCCCATGGTGTACTCT
AATTTTGTCATTGTTACTCATCGTATCTTAATTCAAGAAAATAATGATTT
AACCTATTACTGTGTTGGGGCGGGCTCCGTCCACTTTTGTGGTAAATTCT
TCCGTGTTTCTCTTTTTCACTCTTCCTCCTCTCTTACTTACCCACACCCC
TCCCAATTTTTTCGTTATCTAGTAACCATCACATAACCTCTCACCTCCAC
CTTATCCGATTGATAACGCCCTAATTTTTTATCTGCTCTCTCCCCTCCCC
ACCTCTATAATATCATTTAGTTTGTCTAACAACATCTAACAACAACGTCA
CAATCTTTGATTTTTACACGCTTCCATTACCTATATATATCTCTAATTAC
TTATTATCTACGCACACTTTTATCACATAAACTTTTAATACTACACATTT
TATGACTCACTCTCCAACATCTATTCACTTCTACTCACTACTATCTTTAA
TAATTTCATTCTTTATTCACTTTATTTATAGATTGCGAGTCCTTTTGCCT
CTACCCCTTTTCACCAACCTCTACACGACTAAGTGCGTATGTATATTCTT
ATTTACTTAACCATCTATATCCCCACCACCCATTCCTCCTCACCACTACT
CATAATTGATACGCTTATGTAAATAGGACAATTCTATCCTTAAGATTATC
AACGCGCGGAANTCCGCTCTCACACATTATCTGTTTCTTTTGTTATATTT
TTTAATATATATCAACAATAATAGATAATGCTCACTCACATCCCACACCA
TCTACGAACATTATTCGAGTATGATGTTTATGTAGATGTGTTATAAGTGA
NAATGATGATCTATTTATATTCTATTCATATTTTATTTTGTTTCATAGTC
ATATCGACACTTTAATCTTATCGATACGTAA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTGAAAACCCTTGATAAGTTCA
AGGGAGAGGAATTATTTGGCTGACTACCACAATGGGAGACATCATGGGGG
AAACAATAATTAAGCTAGACCTTAAGGATGTCTTAAGAAAAATTGTGCTT
AATTAAGGAATTCAAAGCAAAAACAACATATATGAAAGCTAACAGGGCAT
GGCCCAGAAATGGTAAGAAATTCAGGTGTTGGGAACTATTCCAAATTCAC
AGAGAATTGGAATGTAAGCAGCTCACCTCATTTTAGCCATGTCCAGCAGA
ACCTTGTTTGTTGCTAAATTATTTGGACCCCCCCCCCTCTTATTAGCGTG
TTTCTGCCTTGCTTCCACCAGCCTGGCATATAGACCAGTCTAGCAAAAAA
AAAAGGGGGGGGGGGACACAGCACTGCTTTAAAACACACTTAGAACTCCA
GGCACCACTGTTCCATCTACCTTAGACTATGAGCTACGTTTTCATAAGCT
GACCGTCACTGCACAGAAGCCTTACCCGAGCGTCCAGCTCTTGGGCTGAG
ATGGCAGGTTCTAAGGGGCTGGAAGATGTTCCTGGTGACGGCATCACGGC
ACTAAAATATTTAAAAGAAAATAAATACGCTTTCCTTCTTCGGTTACTTT
TTAATTCATACTCCAAATAAGAATCTTTCCAGAACTGGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c15.g1 MSMg01no198_c15.g1 CHROMAT_FILE:
MSMg01no198_c15.g1 PHD_FILE: MSMg01no198_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:18 2005
         (297 letters)



>mm_chr8_34367334_34368030
          Length = 697

 Score =  574 bits (297), Expect = e-168
 Identities = 297/297 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagcaaaaaaaaaagggggggggggacacagcactgctttaaaacacacttagaactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagcaaaaaaaaaagggggggggggacacagcactgctttaaaacacacttagaactcc 260

                                                                       
Query: 61  aggcaccactgttccatctaccttagactatgagctacgttttcataagctgaccgtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaccactgttccatctaccttagactatgagctacgttttcataagctgaccgtcac 320

                                                                       
Query: 121 tgcacagaagccttacccgagcgtccagctcttgggctgagatggcaggttctaaggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacagaagccttacccgagcgtccagctcttgggctgagatggcaggttctaaggggc 380

                                                                       
Query: 181 tggaagatgttcctggtgacggcatcacggcactaaaatatttaaaagaaaataaatacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaagatgttcctggtgacggcatcacggcactaaaatatttaaaagaaaataaatacg 440

                                                                    
Query: 241 ctttccttcttcggttactttttaattcatactccaaataagaatctttccagaact 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttccttcttcggttactttttaattcatactccaaataagaatctttccagaact 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)