BAC Information

Click to search

BAC

Clone NameMSMg01-201L12
Chromosome8 (Build37)
Map Location 112,972,126 - 112,972,359
singlet/doubletsinglet
Overlap geneHydin
Upstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, LOC672398
Downstream geneVac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201L12.T7 (MSMg01no201_l12.b1)MSMg01-201L12.TJ (MSMg01no201_l12.g1)
ACCAG387162
length676789
length of high quality
(start - end)
---234 (127 - 360)
definitionCHROMAT_FILE: MSMg01no201_l12.b1 PHD_FILE: MSMg01no201_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:08 2005CHROMAT_FILE: MSMg01no201_l12.g1 PHD_FILE: MSMg01no201_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTACTTTCGGAAGNGGATCCGCGGGATGAAATTGACAAAAAAAAGGTNTT
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXN
CTCTTCCCGTCCCTTTTTCCACTTTTCGGAATTACAAAAAAGGGNCCNNG
CAACGAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAGAAGCATTAGTATACAATG
ACAAGTGCCTTTCCTTATGCCCAAGAGATAAAGTAGAAAGGAAAGTTTTG
ATATTTACCCAACCAAAACATACAACTGGACATGTGCAAAAACCACACAG
TTCAACTCTCTGTGTTGTTACTTATGTTGCTCTTGCCTGTCACACTTTTC
AGTTAAGAGCCATGTTTAATAGCTAAAGCAGAGGAAAGGAGGGGTAGATG
GGGCTGTGGGAAGGATTTTTTTTAACATAATGCCTGTAAGTTGGGTTCAG
GATTTGAATTCATCCCGAACTAGGCCCCAAAATAGGGGTGTTATAAATAT
AGTTGNTGTTCCCCAAACNCCATCCTAAAATAGGGGGTGGGGGGGGGATA
TCTCTTTTTTGTCTTTTGTTTATAATGGAATGAATCTTTAGACTTATCCT
TTGACTATTGGATTTCAATCGCAAGTGGAATATTGAAATTATTGAAAATT
CAATGTTTTATATTAGAAACCCCATATTTCACAAGACTTAATACGAGAAA
ATAATTTATGAGCCTAAAATTAGTTTTTGATAGAGACAAAGATATTATAT
TGTAAGTCTTTACATGTATGTGTATCCATTAAAAAAGACAACCTTCAGGT
TTTCTATTTGAACATCACACGGGATACACTATATGATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_l12.g1 MSMg01no201_l12.g1 CHROMAT_FILE:
MSMg01no201_l12.g1 PHD_FILE: MSMg01no201_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:08 2005
         (234 letters)



>mm_chr8_112971926_112972559
          Length = 634

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggagaagcattagtatacaatgacaagtgcctttccttatgcccaagagataaagtag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 434 aaggagaagcattagtatacaatgacaagtgcctttccttatggccaagagataaagtag 375

                                                                       
Query: 61  aaaggaaagttttgatatttacccaaccaaaacatacaactggacatgtgcaaaaaccac 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 aaaggaaagttttgatatttacccaaccaaaacacacaactggacatgtgcaaaaaccac 315

                                                                       
Query: 121 acagttcaactctctgtgttgttacttatgttgctcttgcctgtcacacttttcagttaa 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acagttcaattctctgtgttgttacttatgttgctcttgcctgtcacacttttcagttaa 255

                                                                 
Query: 181 gagccatgtttaatagctaaagcagaggaaaggaggggtagatggggctgtggg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagccatgtttaatagctaaagcagaggaaaggaggggtagatggggctgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)