Query= MSMg01no204_e08.b1 MSMg01no204_e08.b1 CHROMAT_FILE:
MSMg01no204_e08.b1 PHD_FILE: MSMg01no204_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:44 2005
(370 letters)
>mm_chr8_62571163_62571931
Length = 769
Score = 673 bits (348), Expect = 0.0
Identities = 360/364 (98%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 5 gaattcagataatttccaggcattgaatggagcttggggaatagagtggtgaatgataaa 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 567 gaattcagataatttgcaggcattgaatggagcttggggaatagagtggtgaatgagaaa 508
Query: 65 gacatcatccttcagtaacagagctggaccacttaggaattgcctcacaggaaaaactct 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 507 gacatcatccttcagtaacagagctggaccacttaggaattgcttcacaggaaaaactct 448
Query: 125 tcctatggggttagcactaatattctagaatagttcttaagaatttttgagagactcgga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcctatggggttagcactaatattctagaatagttcttaagaatttttgagagactcgga 388
Query: 185 catcttgtgaatcattttaccataataatgtctcaattacagaacacgttattgaatttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 catcttgtgaatcattttaccataataatgtctcaattacagaacacgttattgaatttc 328
Query: 245 tttctcttgatatctttactttaatgggttgtgctcagcatgtctaaagaagaagcatat 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 327 tttctcttgatatctttactttaat-ggttgtgctcagcatgtctaaagaagaagcatat 269
Query: 305 tcccttgcagttttggataggagcttaagccaagatgagtgcaaaactattctgggaatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcccttgcagttttggataggagcttaagccaagatgagtgcaaaactattctgggaatt 209
Query: 365 agca 368
||||
Sbjct: 208 agca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space: 274360
Effective search space used: 274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no204_e08.g1 MSMg01no204_e08.g1 CHROMAT_FILE:
MSMg01no204_e08.g1 PHD_FILE: MSMg01no204_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:44 2005
(598 letters)
>mm_chr8_62441258_62442255
Length = 998
Score = 1071 bits (554), Expect = 0.0
Identities = 584/594 (98%)
Strand = Plus / Plus
Query: 1 cttaataagagcaagtatttatcaaacatctgttgtagttggcacaagggaaatatcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaataagagcaagtatttatcaaacatctgttgtagttggcacaagggaaatatcata 260
Query: 61 aaattaaaaaataagtaaaataactgtattttaaaaggttatgctacagtttgtttggat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaattaaaaaataaataaaataactgtattttaaaaggttatgctacagtttgcttggat 320
Query: 121 tcataacaaacatacactgtaacattcgtgttaagtatccaaaatacaaacattagtaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataacaaacatacactgtaacattcgtgttaagtatccaaaatacaaacattagtaag 380
Query: 181 gcattcgattttgtatttagagtttcgatttttttaaattgatctccaatagcctagata 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gcattcgattttgtatttagagtttcgattttttaaaattgatctccaatagcctagata 440
Query: 241 attgcatcacttcaaagcacgtattgtactagcaggtggggcctatctctaaaggacaga 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgcatcacttcaaagcatgtattgtactagcaggtggggcctatctctaaaggacaga 500
Query: 301 gtctttaggactcagatctgaactcatgaatgagtccctacccacaccccttgcatcttc 360
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 501 gtctttaggactcagatctgaactcatgaatgagtccctacagagatcccttgcatcttc 560
Query: 361 ctcagcataaataaagcaagagtgcaccaagaagaaactaagcccagtctatgagctaat 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 ctcagcataaataaagcaagagtgcaccaagaagaaactaaacccagtctatgagctaat 620
Query: 421 aatcagtcttttgcagttaaacaagagaaagaagacaaaccaatagaaggaaaagagccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatcagtcttttgcagttaaacaagagaaagaagacaaaccaatagaaggaaaagagccc 680
Query: 481 aatggaaaatgccaggttcagactcacccttttgtttactccataaaaactatcaactgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggaaaatgccaggttcagactcacccttttgtttactccataaaaactatcaactgg 740
Query: 541 aagccataatgcacactcagagaccctgatgcagagagccaaatactgaatctg 594
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 aagccataatgcacactcagagaccctggtgcagagagccaaatactgaatctg 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
