BAC Information

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BAC

Clone NameMSMg01-205D18
Chromosome8 (Build37)
Map Location 49,149,061 - 49,149,400
singlet/doubletsinglet
Overlap genenone
Upstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
Downstream geneLOC100040113, Dctd, Odz3, 2900073C17Rik, LOC100039866
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205D18.T7 (MSMg01no205_d18.b1)MSMg01-205D18.TJ (MSMg01no205_d18.g1)
ACCAG389293AG389294
length749730
length of high quality
(start - end)
89 (124 - 212)343 (77 - 419)
definitionCHROMAT_FILE: MSMg01no205_d18.b1 PHD_FILE: MSMg01no205_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:04 2005CHROMAT_FILE: MSMg01no205_d18.g1 PHD_FILE: MSMg01no205_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCGCTCCCAGCAGCTACCTCACAACCATATACTCCTGGGTTCCCC
ATGTGGACAGTAGACTTGACACCCAGACAGATGGATGGACAGACAGATAT
ATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATAGATATATATAGAGATAGTGAGAGTGTCAGTGTCTACC
ACTTACGATCCGAGTGTGACGACCTCTCTGCGGAGGAGAATGGGAGCGCG
CGACCGAGTGCGGGAGTGTTTTTTTGTGAGATAGTGTGCGAGAGGAGGGC
GCGCGTGTTTTTTTTTTCCCCCCCCCCCCCCCCTGAGAGTTAGTGTATTA
TGATGTTGTTTTTCCCCCCCCCCCAAAAAAAAAGAANGTGGGTGGGGGGG
GCACCGTGTTGCCCGTTTGCTTTTGACATCCCCCATTCTCTCCCTTTTTT
CCCATCCTTTCTGCATCGCTTCCTCCTCTCCCATCTTTTATCTTCTTCCT
TTTTTTCCCTTCTCCATATTCTTCCCCTTTCTTCCTTTTCCCTTTCATGT
TCCCCATTACTATCTTGCCTTGTCTCCTTCCTTTCTGAGTTTTCTTTCTC
CAGTCATTTTTTTTCCCCCTTCATTCCCCACCCACCCCATCCTTATTCAT
AGTCTTTACTTGAACATTTTTACCATTCCCTTTTTACCCCTTTCTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCTGTTCTTGGTCCCAAGCTTG
TAGTGTGATTCTTTCTGTCTGAATGCCTCTCAAAAATGAAATGACAATCT
GTAGATGTGTCTCTTTATCAACAAGGGTATTGAAATTTTGGAAGACACGG
GAACAGATGAAAGTACTTGGTTCTGGGAATGAAAATTACATATGGACAGA
ATCCCAGTACAATGAGCTGATCTGCTGTTCTCTATTGAACAATTAGTCCT
TGCCTGAATGCAAGGGCTTCTCGCCATGTCCCGAAAGAGACAAGGAAATG
TGGGTTTTTAGGCTTTCCATAAAACAAATATTTTTGCGTTTCCAGTTTCC
TAGAGTGTGTTCCCTTCGCCACCCCCAACAATTTTGCTCCTCTAAGGTCA
AGTCTCTGTGCACCTGAGTTGTGAGTGCGTTTATGTCTCTGTGCATACAA
TGTGATCCTGTAACTACAGTATAAATGTGAATACGAATAATAATGAACTA
GGAGCGCTTAGTACCTTGATTACTTTCATTTATAAAAGGTTCATCAATCT
AATTCATAGGCTGCAAAGATGGCTCATCGCTTAACATCACTGACTGCTCT
TCCCAATGTCCTGATTTCATATCTCCGCCTTCACATGTTGGCTCACAATC
ATCCGCAACGAGATCTGACGTCCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_d18.g1 MSMg01no205_d18.g1 CHROMAT_FILE:
MSMg01no205_d18.g1 PHD_FILE: MSMg01no205_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:04 2005
         (343 letters)



>mm_chr8_49148861_49149603
          Length = 743

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctgttcttggtcccaagcttgtagtgtgattctttctgtctgaatgcctctcaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatctgttcttggtcccaagcttgtagtgtgattctttctgtctgaatggctctcaaaaa 260

                                                                       
Query: 61  tgaaatgacaatctgtagatgtgtctctttatcaacaagggtattgaaattttggaagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatgacaatctgtagatgtgtctctttatcaacaagggtattgaaattttggaagac 320

                                                                       
Query: 121 acgggaacagatgaaagtacttggttctgggaatgaaaattacatatggacagaatccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgggaacagatgaaagtacttggttctgggaatgaaaattacatatggacagaatccca 380

                                                                       
Query: 181 gtacaatgagctgatctgctgttctctattgaacaattagtccttgcctgaatgcaaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 gtacaatgagctgatctgctgttctctattgaacaattagtccttgcctgactgcaaggg 440

                                                                       
Query: 241 cttctcgccatgtcccgaaagagacaaggaaatgtgggtttttaggctttccataaaaca 300
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cttctcaccatgtgccgaaagagacaaggaaatgtgggtttttaggctttccagaaaaca 500

                                                   
Query: 301 aatatttttgcgtttccagtttcctagagtgtgttccctt 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatttttgcgtttccagtttcctagagtgtgttccctt 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)