Query= MSMg01no205_p11.b1 MSMg01no205_p11.b1 CHROMAT_FILE:
MSMg01no205_p11.b1 PHD_FILE: MSMg01no205_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:58 2005
(689 letters)
>mm_chr8_31413580_31414667
Length = 1088
Score = 1290 bits (667), Expect = 0.0
Identities = 681/687 (99%), Gaps = 5/687 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgag--ttatccacgagtttatcctctgctcgcacatgcacctacacacaaat 62
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaggataa--cacgagtttatcctctgctcgcacatgcacctacacacaaat 262
Query: 63 gtgtaaacaatgtgctcttcactgtaagttcaccatagctgaataacactgacgaataca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtgtaaacaatgtgctcttcactgtaagttcaccatagctgaataacactgacgaataca 322
Query: 123 gaaactacagaggaattatgatatttcaaagttcttggaatctgagtattaaaaagattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaaactacagaggaattatgatatttcaaagttcttggaatctgagtattaaaaagattc 382
Query: 183 tgtgctactataagtatggaagccagtcattttgttcaggatttgaacatatatgattcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgctactataagtatggaagccagtcattttgttcaggatttgaacatatatgattcc 442
Query: 243 cagacttacattgccactaatttttgtaaccatactttttttttaacatagatgattttt 302
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 443 cagacttacattgccactaatttttgtaaccatactttttttt-aacatagatgattttt 501
Query: 303 ttctttttttttaatatattaaaatattacgacattcattttcacttaaagcaaatctta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttctttttttttaatatattaaaatattacgacattcattttcacttaaagcaaatctta 561
Query: 363 tttgcctctcaacttccatcctgctagacagaaaaggaattgggaaaccttattctgacc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttgcctctcaacttccatcctgctagacagaaaaggaattgggaaaccttattctgacc 621
Query: 423 catccgttacatcagggatgggtaaaggtttgcataagcaggcaaaaactggttttctaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 catccgttacatcagggatgggtaaaggtttgcataagcaggcaaaaactggttttctaa 681
Query: 483 aaagacccagatatcttgtacttctttctagcctaaccatcctatatttagagcacaagt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaagacccagatatcttgtacttctttctagcctaaccatcctatatttagagcacaagt 741
Query: 543 atctttgccaagactaggctacctacaatatcagagaacaactaggaaaatgggtgacat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atctttgccaagactaggctacctacaatatcagagaacaactaggaaaatgggtgacat 801
Query: 603 acttcctttttcgactaagaaacactaaaaaaaacaaagaaacttcccttgttgctgcct 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 acttcctttttcgactaagaaacactaaaaaaaacaaagaaacttcccttgttgctgcct 861
Query: 663 ggcaccctcaagataatgtttctacat 689
|||||||||||||||||||||||||||
Sbjct: 862 ggcaccctcaagataatgtttctacat 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_p11.g1 MSMg01no205_p11.g1 CHROMAT_FILE:
MSMg01no205_p11.g1 PHD_FILE: MSMg01no205_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:58 2005
(282 letters)
>mm_chr8_31467755_31468436
Length = 682
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%)
Strand = Plus / Minus
Query: 1 actagagatacttgagtaggatggacaaagattatcttaaacaaaggtacagagcctgca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actagagacacttgagtaggatggacaaagattatcttaaacaaaggtacagagcctgca 423
Query: 61 gtaaaagcttggattttggttgggatgctctaagcaagagtaggagtcagagtggacaaa 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaaaagcttggattttggttgggatgctctaagcaagagtaggagtcagagtggacaaa 363
Query: 121 atgtgtgtcagtcagctgtgtgttactgtaacaaagtatctgatgctagctacaaggagg 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atgtgtgtcagttagctgtgtgttactgtaacaaagtatctgatgctagctacaaggagg 303
Query: 181 aaggaggctgatttgcttcacagattgggaggttcaaagttgaatattggtcatctgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaggaggctgatttgcttcacagattgggaggttcaaagttgaatattggtcatctgcat 243
Query: 241 taacatggcctttggcgatgcaagggcatagataccatcaca 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taacatggcctttggcgatgcaagggcatagataccatcaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
