Query= MSMg01no208_k09.b1 MSMg01no208_k09.b1 CHROMAT_FILE:
MSMg01no208_k09.b1 PHD_FILE: MSMg01no208_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:31 2005
(241 letters)
>mm_chr8_117419329_117419966
Length = 638
Score = 406 bits (210), Expect = e-118
Identities = 230/238 (96%), Gaps = 3/238 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagtttacatgcccaccatgatgaagaggatggggcagggtaggcagcaaaggc 63
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 438 ggaattcagtttacatgcccaccatgatgaagaggatggggcggggtaggcagcaaaggc 379
Query: 64 agagagaagggaggaggaaaaaagtcttagagttcaaggctcccctctgtcaccctgggc 123
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 378 agagagaag---ggaggacaaaagacttagagttcaaggctcccctctgtcaccctgggc 322
Query: 124 acatgtcaatcatggtctctacttgggcctcagttccttgtttaaaataaaaggcaggaa 183
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 acatgtcaatcatggtctctacttgggcctcagttccttgtttacaataaaaggcaggaa 262
Query: 184 aggacccggtgcagagcaacctggcctaaaaaagtatgtgcaaagaatgtggaagacc 241
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aggacccggtgcagagcaacctggccaaaaaaagtatgtgcaaagaatgtggaagacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 638
Length adjustment: 9
Effective length of query: 232
Effective length of database: 629
Effective search space: 145928
Effective search space used: 145928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no208_k09.g1 MSMg01no208_k09.g1 CHROMAT_FILE:
MSMg01no208_k09.g1 PHD_FILE: MSMg01no208_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:32 2005
(279 letters)
>mm_chr8_117302968_117303646
Length = 679
Score = 532 bits (275), Expect = e-155
Identities = 278/279 (99%)
Strand = Plus / Plus
Query: 1 tctcagcatagtgtgcattggcaaaagggaagaagagcccatagaaatagatgaaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcagcatagtgtgcattggcaaaagggaagaagagcccatagaaatagatgaaaaggc 260
Query: 61 atgtctttagtagtttaaatggcaaactcctataaacttgcatttctatatcacattata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctttagtagtttaaatggcaaactcctataaacttgcatttctatatcacattata 320
Query: 121 aaggccactcctcatgaacagttcatacagaaagatgctctaatgataaggttattaaaa 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggccactcctcgtgaacagttcatacagaaagatgctctaatgataaggttattaaaa 380
Query: 181 acgcaggcttatttccagaatttaaacttggaagaagctggtaggaaaataaaatcttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgcaggcttatttccagaatttaaacttggaagaagctggtaggaaaataaaatcttct 440
Query: 241 gtgctcctaactaaaaaagggagagagagaaagaggaag 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctcctaactaaaaaagggagagagagaaagaggaag 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
