This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
MSMg01-208K09
Chromosome
8 (Build37)
Map Location
117,303,168 - 117,419,766
singlet/doublet
doublet
Overlap gene
Wwox
Upstream gene
Adamts18
,
Nudt7
,
AI427515
,
Clec3a
Downstream gene
Maf
Link
Open Mouse BAC browser
Click to get alignment info.
name
Adamts18
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:208936
MGI:2442600
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Nudt7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67528
MGI:1914778
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
AI427515
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:270097
MGI:2142534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Clec3a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:403395
MGI:2685642
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Wwox
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:80707
MGI:1931237
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Maf
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17132
MGI:96909
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Adamts18
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:121583652
GeneID:208936
MGI:2442600
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
transcript_id
: NM_172466.2
name
Nudt7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142373936
GeneID:67528
MGI:1914778
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: nudix (nucleoside diphosphate linked moiety X)-type motif 7
transcript_id
: NM_024437.2
name
Nudt7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142372993
GeneID:67528
MGI:1914778
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: nudix (nucleoside diphosphate linked moiety X)-type motif 7
transcript_id
: NM_024446.3
name
AI427515
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129925
GeneID:270097
MGI:2142534
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: expressed sequence AI427515
transcript_id
: NM_173016.3
name
Clec3a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118131104
GeneID:403395
MGI:2685642
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: C-type lectin domain family 3, member a
transcript_id
: NM_001007223.2
name
Wwox
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31980961
GeneID:80707
MGI:1931237
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: WW domain-containing oxidoreductase
transcript_id
: NM_019573.2
name
Maf
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71480166
GeneID:17132
MGI:96909
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
transcript_id
: NM_001025577.2
name
Adamts18
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:121583653
GeneID:208936
MGI:2442600
definition
GO_component
: GO:0031012 - extracellular matrix [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]
GO_function
: GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]
codon_start
: 1
product
: a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18
protein_id
: NP_766054.2
name
Nudt7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:18859595
CCDS:CCDS22687.1
GeneID:67528
MGI:1914778
definition
GO_component
: GO:0005777 - peroxisome [Evidence IDA]
GO_function
: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA]
GO_process
: GO:0046356 - acetyl-CoA catabolism [Evidence IDA]; GO:0015938 - coenzyme A catabolism [Evidence IDA]
codon_start
: 1
exception
: mismatches in translation
note
: isoform 1 is encoded by transcript variant 1; coenzyme A diphosphatase
product
: nudix (nucleoside diphosphate linked moiety X)-type motif 7 isoform 1
protein_id
: NP_077757.1
name
Nudt7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27754009
CCDS:CCDS22688.1
GeneID:67528
MGI:1914778
definition
GO_component
: GO:0005777 - peroxisome [Evidence IDA]
GO_function
: GO:0003986 - acetyl-CoA hydrolase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence IEA]
GO_process
: GO:0046356 - acetyl-CoA catabolism [Evidence IDA]; GO:0015938 - coenzyme A catabolism [Evidence IDA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; coenzyme A diphosphatase
product
: nudix (nucleoside diphosphate linked moiety X)-type motif 7 isoform 2
protein_id
: NP_077766.2
name
AI427515
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33667095
CCDS:CCDS22689.1
GeneID:270097
MGI:2142534
definition
GO_function
: GO:0016491 - oxidoreductase activity [Evidence IEA]
codon_start
: 1
product
: hypothetical protein LOC270097
protein_id
: NP_766604.2
name
Clec3a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:55925628
CCDS:CCDS22690.1
GeneID:403395
MGI:2685642
definition
GO_function
: GO:0005529 - sugar binding [Evidence IEA]
codon_start
: 1
note
: C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived)
product
: C-type lectin domain family 3, member a
protein_id
: NP_001007224.1
name
Wwox
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31980962
CCDS:CCDS22691.1
GeneID:80707
MGI:1931237
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0016491 - oxidoreductase activity [Evidence IEA]
GO_process
: GO:0007049 - cell cycle [Evidence IEA]; GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0045786 - negative regulation of progression through cell cycle [Evidence IEA]
codon_start
: 1
product
: WW-domain oxidoreductase
protein_id
: NP_062519.2
name
Maf
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71480167
GeneID:17132
MGI:96909
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IEA] [Evidence IDA]
GO_function
: GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]
GO_process
: GO:0050875 - cellular physiological process [Evidence IEA]; GO:0001816 - cytokine production [Evidence IDA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: c-Maf long form
product
: avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
protein_id
: NP_001020748.2
clone name
MSMg01-546B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147E23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139K10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-134H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-136L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340O17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-418I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-308L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-458D17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-331B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114E22
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-401P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548P06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-548A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387G17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-067M21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186J08
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-300B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290G08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535M01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-464L12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-481F13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-316C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372A06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-544F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166M24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-517P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295M13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-473D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-317I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-209J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-210D03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210E03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-210G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-208K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-298F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-382J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-159C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-163O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101G21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504C03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131C09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-468G11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083G02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346G05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269L12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-409A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-198C14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311J23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-378E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-535O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336H24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-375K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-085J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-332O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075G04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-120A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-456N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-516N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371B23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328M21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347G10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-070I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-367J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391H20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-363C20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-448O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524O23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-487M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-074G13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083A12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-472J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-363L03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136G04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225K23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-150C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-020C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-206H16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228N22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-304N01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-163I19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268I19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-099J03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-344A17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-065N12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-080A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225P10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-031E22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-280I12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-286F06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-245P01
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