BAC Information

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BAC

Clone NameMSMg01-209D08
Chromosome8 (Build37)
Map Location 98,665,616 - 98,800,365
singlet/doubletdoublet
Overlap genenone
Upstream geneKifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
Downstream geneLOC333331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209D08.T7 (MSMg01no209_d08.b1)MSMg01-209D08.TJ (MSMg01no209_d08.g1)
ACCAG391821AG391822
length722751
length of high quality
(start - end)
320 (45 - 364)267 (76 - 342)
definitionCHROMAT_FILE: MSMg01no209_d08.b1 PHD_FILE: MSMg01no209_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:16 2005CHROMAT_FILE: MSMg01no209_d08.g1 PHD_FILE: MSMg01no209_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,800,051 - 98,800,365)(98,665,616 - 98,665,882)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGTTCTATCCCATAGCATGGGGTCCCCTCCCCCGTCACATGGCT
CACTGGGCAGCACACATCTTTGCCCAGATTTCTGCAGGCTCGATCTTCGT
TCACAGTAAAAGAAGCATAAGCTAAGGAACAGGCAAGCTTGCTGTTGAAT
CCCAACTAGATTCCTAACCAGGTGACCATGGCAAGATCTGAACTTGAAAT
CACAAGTCATGGATGGAGAAATAAGGAGACAGTACTGTTGTGAGAATTAG
CTAGAACACTTTCAAATCTGCCCCCACCATGCCTGGGTGATGGTAGGTGT
GCATTCAGATTGTTTTTGCCGCGCCGCCACCACACCTAGAAGCTGAATTT
CCAACTATTTTCAGCGTCTGCCTATATCCATGTTAGGCCAAGTTGTAGGA
CTATCCCCTGTGCTATTCAAGCTGGTAGTAAACTGACACATGTGATGGAG
GGAAACTATTTTCCTGTAGGGGAACAATGTTATAGTCAGCGTCAGTCTTT
CTATAGTTCCCGGATCTCTCCACAGCGGATAAAGTAGAGAGAATGAATAT
CTCTTACTGGAATAATGATGCGGAACAAAAGATAATTCATGTGAATGCAT
ATACCTCACATTTAACTACCTAGTTTCCTTTTATTTACATCCCATATACT
GCCTCCTCCTCTCCTTCCCTGA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTCAGTTCCATTTCAGGGGCCTC
TGGGCCCCCATGTCTGAAGTGTATGGTGTCTTCTGCAATAAGGACTTTCT
TTCCATCTCTGGAGGGAAGCTGAGGGCAACACCAATAGGCTGTATGTTTT
AAAAGTCTTTTGGACAGTGTTTACCTGTTTGATGCACTTTTTTTCCTACA
TGTTATGCACATCAACGAGAAAGAAAAAGATATAGTTTGGTGGGTAGGAA
GGTGGGGTATATCTGAAAGAAATTGATTTAGCAGAATTCTTCCATGAATA
CAGGCGCTTGCTATTATTTCTGACCCCCCCCCCCCGAATCATAGGATCCA
TATGATGGGAGGGTATTTTCCCCCAACTCCTGTATGTTGTCCTCTGACTC
TCATTCACTCATAGTACCACGGTTGGTTTTATCTCCACCCCGTATCTCCA
TTTTTTCTTTATACACCGTCACCGCCCCTGTTTAATTTTCCCCTTTTTTT
GAAATTCCCCTCCTCCCTACTCTTTTGTGTATTTGCCGTTTCTACACTCT
TTTGATATCCCTTTTTTACATTTTGTTCTCACTTGTCCATTCATCTTTAT
CTCCCCCCCGCCATTTTTTATTCTCTCCCCTCTGCTTGTTTCACCTTTCG
TTTTCTCTCTCCTTTTCTTATTTTTCCCCCCTTCTTCCCTGCTTCTTTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_d08.b1 MSMg01no209_d08.b1 CHROMAT_FILE:
MSMg01no209_d08.b1 PHD_FILE: MSMg01no209_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:16 2005
         (320 letters)



>mm_chr8_98799848_98800567
          Length = 720

 Score =  540 bits (279), Expect = e-158
 Identities = 306/315 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgttctatcccatagcatggggtcccctcccccgtcacatggctcactggg 63
           |||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 ggaattcactgttctaacagatagcatggggtcccctcccccatcacatggctcactggg 459

                                                                       
Query: 64  cagcacacatctttgcccagatttctgcaggctcgatcttcgttcacagtaaaagaagca 123
           |||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 458 cagcacacatctttgtagagatttctgcaggctcgatctttgttcacagtaaaagaagca 399

                                                                       
Query: 124 taagctaaggaacaggcaagcttgctgttgaatcccaactagattcctaaccaggtgacc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 taagctaaggaacaggcaagcttgctgttgaatcccaactagattcctaaccaggtgacc 339

                                                                       
Query: 184 atggcaagatctgaacttgaaatcacaagtcatggatggagaaataaggagacagtactg 243
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 atggcaagatctgaacttgaaatcacaagtcatggatgaagaaataaggagacagtactg 279

                                                                       
Query: 244 ttgtgagaattagctagaacactttcaaatctgcccccaccatgcctgggtgatggtagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttgtgagaattagctagaacactttcaaatctgcccccaccatgcctgggtgatggtagg 219

                          
Query: 304 tgtgcattcagattg 318
           |||||||||||||||
Sbjct: 218 tgtgcattcagattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_d08.g1 MSMg01no209_d08.g1 CHROMAT_FILE:
MSMg01no209_d08.g1 PHD_FILE: MSMg01no209_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:16 2005
         (267 letters)



>mm_chr8_98665416_98666082
          Length = 667

 Score =  485 bits (251), Expect = e-142
 Identities = 263/267 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcagttccatttcaggggcctctgggcccccatgtctgaagtgtatggtgtcttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtcagttccatttcaggggcctctgggcccccatgtctgaagtgtatggtgtcttctg 260

                                                                       
Query: 61  caataaggactttctttccatctctggagggaagctgagggcaacaccaataggctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataaggactttctttccatctctggagggaagctgagggcaacaccaataggctgtat 320

                                                                       
Query: 121 gttttaaaagtcttttggacagtgtttacctgtttgatgcactttttttcctacatgtta 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttaaaagtcttttggacaatgtttacctgtttgatgcactttttttcctacatgtta 380

                                                                       
Query: 181 tgcacatcaacgagaaagaaaaagatatagtttggtgggtaggaaggtggggtatatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacatcaacgagaaagaaaaagatatagtttggtgggtaggaaggtggggtatatctg 440

                                      
Query: 241 aaagaaattgatttagcagaattcttc 267
           |||||||||||   |||||||||||||
Sbjct: 441 aaagaaattgagggagcagaattcttc 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 667
Length adjustment: 9
Effective length of query: 258
Effective length of database: 658
Effective search space:   169764
Effective search space used:   169764
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)