BAC Information

Click to search

BAC

Clone NameMSMg01-209I09
Chromosome8 (Build37)
Map Location 34,358,568 - 34,377,821
singlet/doubletdoublet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209I09.T7 (MSMg01no209_i09.b1)MSMg01-209I09.TJ (MSMg01no209_i09.g1)
ACCAG392019AG392020
length724720
length of high quality
(start - end)		679 (46 - 724)644 (77 - 720)
definitionCHROMAT_FILE: MSMg01no209_i09.b1 PHD_FILE: MSMg01no209_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:41 2005CHROMAT_FILE: MSMg01no209_i09.g1 PHD_FILE: MSMg01no209_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,358,568 - 34,359,242)(34,377,178 - 34,377,821)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCAGCTTTGCAGAAAATGTTTGTTTTTAAGGTGACCGTTGCTT
TAGTCCAACAGAATTTTTTAAAAATCAGATTTATTGTTATAACATGCTGA
CCTTATATTTGTGGATTTAAGAGGGAAATTCTCTAATGTGCCTTAACTTG
AATTCTGGGGTTGGGGATTGGGGAACATCATTTCTTAAATATTTCTGTAA
GGCAAGCAGGGGACAGAGCTTCATGGCAGAGCTGAGGTTCCTCAGTGGGA
CAAGAACAAAGAACAAAGGCCCTTTTTAATGGGAGCTTTGCCTGCATGTG
TGTCTATGCATCATGTGTTTGCATGGTCCCAACAGAGGTCAGAAGGGGCT
GTCAAGAGTCCCTGGAACTGGAGTTACAGTAAGTTGTGGGTGGCAGAAAC
GCCAGTCTTCTGGAAGAACAGCCTGGAGTCCTAACTGCTGAGCCATCTGT
CAAGCACGGAGAAGAAACCCCTCCGCTGGGGGCTACAGAGCTTGGCATGT
CTGGTAGGGACTCAGAGGCCGTCAGGGGAAATGGAGGAGTCAGTCCTTCA
GCGGCTGGGAGTAACCATGAAGGACCCGGTGGCTTTAGACCTGCACGCTC
GATTTGAGGATGGGTGAGAAAATATCATCTGANAAGAAAGACTTTCAGTA
TACCTTCTGCTGAGCAAGAAATGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCCTAGGGCATCATTTGTAC
TGGTGAAGAGTGTGGGCTGCACTTGAAGCACCTTTGTAATTTGGGCTTCT
GTGTCTTGGGATATTCTTTGGATCATTTACTTTTTAAAAATTTATTTGTT
TATTTATTTGTTACACGGGTCATTTACTTTTTAAACCGTCTTTAAAGTTA
TCAAAGGTGGTGGTTCAGCAGCTAATTTTTTAGCTTATTTATTTGAAGAA
TTGATTGCTTAGGGGGAAATTGTTATTTTGAGATTTCTTTGCATTTAAAT
GTTTTTGTAATTTCCTCTTCTTTTTAATGGACTTTACTTGTGGAAAAATA
GTCTAATTTGGAGAGAACGCATTCTTACAAAGTGCCTGAGAAAGTTTCTT
CTGGGACTAACATTCCTAAAAAAAGGTACAGAGTTCTAATTTTAATTTAT
TATATTTGCTTACATTATAGATACTGATATTTTCCTTTCTTTCCTAAAGA
AAAAGGATTATCAGATGTTGGACTGTTTCATTGAAAAGAACAATCACAAC
ATAACCTCTGTAGTTGTAACGACTAAAACAGACACATAGAAAGTTAGGGT
GATGGATCGTGCCTCTCAGGCACCTCTGTTTACAAGGCTTTGTATTACAG
TGCTAAGCACTTGCCGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_i09.b1 MSMg01no209_i09.b1 CHROMAT_FILE:
MSMg01no209_i09.b1 PHD_FILE: MSMg01no209_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:41 2005
         (679 letters)



>mm_chr8_34358364_34359442
          Length = 1079

 Score = 1299 bits (672), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttagtccaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcagctttgcagaaaatgtttgtttttaaggtgaccgttgctttagtccaac 264

                                                                       
Query: 65  agaattttttaaaaatcagatttattgttataacatgctgaccttatatttgtggattta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaattttttaaaaatcagatttattgttataacatgctgaccttatatttgtggattta 324

                                                                       
Query: 125 agagggaaattctctaatgtgccttaacttgaattctggggttggggattggggaacatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agagggaaattctctaatgtgccttaacttgaattctggggttggggattggggaacatc 384

                                                                       
Query: 185 atttcttaaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttcttaaatatttctgtaaggcaagcaggggacagagcttcatggcagagctgaggtt 444

                                                                       
Query: 245 cctcagtgggacaagaacaaagaacaaaggccctttttaatgggagctttgcctgcatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcagtgggacaagaacaaagaacaaaggccctttttaatgggagctttgcctgcatgt 504

                                                                       
Query: 305 gtgtctatgcatcatgtgtttgcatggtcccaacagaggtcagaaggggctgtcaagagt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtctatgcatcatgtgtttgcatggtcccaacagaggtcagaaggggctgtcaagagt 564

                                                                       
Query: 365 ccctggaactggagttacagtaagttgtgggtggcagaaacgccagtcttctggaagaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccctggaactggagttacagtaagttgtgggtggcagaaacgccagtcttctggaagaac 624

                                                                       
Query: 425 agcctggagtcctaactgctgagccatctgtcaagcacggagaagaaacccctccgctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agcctggagtcctaactgctgagccatctgtcaagcacggagaagaaacccctccgctgg 684

                                                                       
Query: 485 gggctacagagcttggcatgtctggtagggactcagaggccgtcaggggaaatggaggag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggctacagagcttggcatgtctggtagggactcagaggccgtcaggggaaatggaggag 744

                                                                       
Query: 545 tcagtccttcagcggctgggagtaaccatgaaggacccggtggctttagacctgcacgct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcagtccttcagcggctgggagtaaccatgaaggacccggtggctttagacctgcacgct 804

                                                                       
Query: 605 cgatttgaggatgggtgagaaaatatcatctganaagaaagactttcagtataccttctg 664
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 805 cgatttgaggatgggtgagaaaatatcatctgaaaagaaagactttcagtataccttctg 864

                          
Query: 665 ctgagcaagaaatga 679
           |||||||||||||||
Sbjct: 865 ctgagcaagaaatga 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_i09.g1 MSMg01no209_i09.g1 CHROMAT_FILE:
MSMg01no209_i09.g1 PHD_FILE: MSMg01no209_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:41 2005
         (644 letters)



>mm_chr8_34377079_34378122
          Length = 1044

 Score = 1245 bits (644), Expect = 0.0
 Identities = 644/644 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtctcctagggcatcatttgtactggtgaagagtgtgggctgcacttgaagcacctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtctcctagggcatcatttgtactggtgaagagtgtgggctgcacttgaagcacctttg 684

                                                                       
Query: 61  taatttgggcttctgtgtcttgggatattctttggatcatttactttttaaaaatttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taatttgggcttctgtgtcttgggatattctttggatcatttactttttaaaaatttatt 624

                                                                       
Query: 121 tgtttatttatttgttacacgggtcatttactttttaaaccgtctttaaagttatcaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtttatttatttgttacacgggtcatttactttttaaaccgtctttaaagttatcaaag 564

                                                                       
Query: 181 gtggtggttcagcagctaattttttagcttatttatttgaagaattgattgcttaggggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtggtggttcagcagctaattttttagcttatttatttgaagaattgattgcttaggggg 504

                                                                       
Query: 241 aaattgttattttgagatttctttgcatttaaatgtttttgtaatttcctcttcttttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaattgttattttgagatttctttgcatttaaatgtttttgtaatttcctcttcttttta 444

                                                                       
Query: 301 atggactttacttgtggaaaaatagtctaatttggagagaacgcattcttacaaagtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atggactttacttgtggaaaaatagtctaatttggagagaacgcattcttacaaagtgcc 384

                                                                       
Query: 361 tgagaaagtttcttctgggactaacattcctaaaaaaaggtacagagttctaattttaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgagaaagtttcttctgggactaacattcctaaaaaaaggtacagagttctaattttaat 324

                                                                       
Query: 421 ttattatatttgcttacattatagatactgatattttcctttctttcctaaagaaaaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttattatatttgcttacattatagatactgatattttcctttctttcctaaagaaaaagg 264

                                                                       
Query: 481 attatcagatgttggactgtttcattgaaaagaacaatcacaacataacctctgtagttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attatcagatgttggactgtttcattgaaaagaacaatcacaacataacctctgtagttg 204

                                                                       
Query: 541 taacgactaaaacagacacatagaaagttagggtgatggatcgtgcctctcaggcacctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 taacgactaaaacagacacatagaaagttagggtgatggatcgtgcctctcaggcacctc 144

                                                       
Query: 601 tgtttacaaggctttgtattacagtgctaagcacttgccgcacc 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tgtttacaaggctttgtattacagtgctaagcacttgccgcacc 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |