BAC Information

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BAC

Clone NameMSMg01-209I17
Chromosome8 (Build37)
Map Location 24,129,901 - 24,130,188
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
Downstream geneAnk1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209I17.T7 (MSMg01no209_i17.b1)MSMg01-209I17.TJ (MSMg01no209_i17.g1)
ACCAG392031AG392032
length764728
length of high quality
(start - end)
318 (45 - 362)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no209_i17.b1 PHD_FILE: MSMg01no209_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:42 2005CHROMAT_FILE: MSMg01no209_i17.g1 PHD_FILE: MSMg01no209_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCCATTGTCTGCTAGGCTTTGCCATTTCCATCAGTCTCATGTT
TGTGTTCTTTTGGGTGTCCCCCAGGCACTTATTCTCCTTGATTTCATTAA
TGTTCCTTTGTGTCTTCGTTAAACTCATTGATCTTTTTCAGGAGCTTTAT
GATTTTTTTCTTAGGTGTCCACGTCCTGGGCTTCATGTAGGTGATTCTCT
TTGGCAAGCAATTCTGTAGGACTAGTGGGCTTTGGAGAGGAGATGCTGGC
TTGATCGTCATGTCATGATATTTATGCATGTGGAATTCCTTTGTTAGTTT
TAAGTTTGTCGTAGATAAGGCAGAAGGGGAGAGATGAGAGGGTGGTGCCT
CTTTTTTTTTTCCCCCCCCCCTCAAAAAAAATTTTTTTTTTGGGGGGGGG
GTTATTTTTTTCATTTTTTCTACATCTATTACTAAATTATTTATATATTT
TTCCTTATTACCCTTACATATATTATATTTCCCTTCTTATATTCTTTTAA
TACCCTATACATCTCATCCCTTCTTTATTATTCCCTCCCCACTCCTTATC
TTCTAATCCTTCCTTTTCTTACCATTTTTTTATTAATTTTGTTTTTATAT
GAAATTAACTTATTTTCGTCTGGTATTATGCCTTTTAACCTCCCACTTAT
TTATTTCTTTCTGTTATAACCAACCCTCCTATTTTACTTTATTTCATTTT
TTATAACAATTTAT
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGATAGGCATTGCTATAAACAT
GAAGGCTGGGAAGCAGGAAGTGTTGTGGTGATCTCAAACCAAACCATTTG
GAGGCCAGAGAAGGCCAGCTGGTGGAGACAGGGCTCCAGAAACCAAGGGG
GCACCAGGGAGGAAGACAGGACATAGTCACCTTTTGTTTTGGAGATCTGC
CTTCCATTTCTCTCTCAAGCAACCACAGGCAAAGCATGTCTCCCCTTTCC
AAGCCAGATCGTTGGTAAAACGGTAGCATAGGCTCCTACCAGTGGATGCC
AGAAGAGCGTGTGTGTGAGCACCTGCCCGCGCACTGACAGCAGTATGGTG
AAGGATCTTGGTTGTGGAACGCCGGCATGGAGTAAGAAAGAGACAGCTGT
CTCCGATGATCCACAGACACCACCATTTGCATAGAATGTTTGAGCTCTCA
TGTGACTTAAGCCCCCTTATGTGAAGCTTCCAGCTCTGCATCCAATGGGG
CACATGGAACTGCTGGCCCATCAGCGGGTCCCCTCACATGCTGGAGGCCT
GAGTGCTTTGTGAGAAAGCCACACACCAGGGATGGAGTGATCCAGAAAAC
CACTGTGAGAGGCACAGGCAGAGACATCAACTTGTTCAGCAATCTCCAGA
ACGTCAGGGTGGGCAGATCTTTCTGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_i17.g1 MSMg01no209_i17.g1 CHROMAT_FILE:
MSMg01no209_i17.g1 PHD_FILE: MSMg01no209_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:42 2005
         (288 letters)



>mm_chr8_24129701_24130388
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgataggcattgctataaacatgaaggctgggaagcaggaagtgttgtggtgatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tctgataggcattgctataaacatgaaggctgggaagcaggaagtgttgtggtgatctca 429

                                                                       
Query: 61  aaccaaaccatttggaggccagagaaggccagctggtggagacagggctccagaaaccaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 428 aaccaaaccatttggaggccagagaaggccagctggtggagacagggctccagaaatcaa 369

                                                                       
Query: 121 gggggcaccagggaggaagacaggacatagtcaccttttgttttggagatctgccttcca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 368 gggggcaccagggaggaagacaggacatagtcaccttttgctttggagatctgccttcca 309

                                                                       
Query: 181 tttctctctcaagcaaccacaggcaaagcatgtctcccctttccaagccagatcgttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tttctctctcaagcaaccacaggcaaagcatgtctcccctttccaagccagatcgttggt 249

                                                           
Query: 241 aaaacggtagcataggctcctaccagtggatgccagaagagcgtgtgt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aaaacggtagcataggctcctaccagtggatgccagaagagcgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)