CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATTTAGACCAGGCTGACCTTGAATGCATAGAGACTGCCTGTT
TCTGCCTCCCAAGTGCTGGGATCAAAGGTGTGCTTGCCAATCACTTTTCC
TAAATACTTTGCCAAAATAATCCTCCAAAATTGAGGATAAGCCTCCTGGT
CAAACTTAGTCCTGGGCTGTCAGTAGATATATTTATTTAGAATATGTAGG
GAAGGGGGGTGGACAGGCTAGTCTCTGGGAATTCATACTCCATACACCAG
GACTTAGTTACTATAACAGAATTTTTGACTAACTCCCTTATGGTAGACAA
TCTATTCTTTTTTTTTTTTCCCCCCNGCGGCCCCTGTGATTATCAACCTC
TCTCATTCTTTTCATTCCCCCCCCAACAAAAAAAATTGATAGATGTCGCC
GGACATACGATCAGTTTAATGTTTCCCCTTATTGGCAAACATCCTGATAA
GTAGACGTTTTCTTCTTTTCAGTTCCTTGCTTATACATTATCACCCTTTC
CCCTGCCCTTCACCCATTTCCCATTTATGTGTTTCGCCTTTTTACAACCC
CTTCCTCTTATCCTTATCCAACGATTACCCCCGTCCATAATGCTCCTCTT
CTGCACGACTACTTTTCCCTCCCTATACTTTCCCCCCTCTTTTTTTCCCC
GCTTCATCTTTTTCCCCTTTCCCCTTCTCTTTTTCCCCTTCTTATTTTCC
CTGACCTTCTTCCCCTTACTTTTCCTCCTN

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCAAGGCTTGTATTTCTAGAAAGTTCTGATCACCTAGTCTCCCTCTTCCC
AGTAAAGCAGAATAGAGGTGACCATAAGCTAAGGTCTGGAGCTGAGGGTT
ATCGCAGAAGGAAGGGGACACAACGTGACATTGGAATGGTCTAAGCTGGC
CTTGGAAACCCCTACAGCTTGCTGGCCTCACAGTGCCAGCTGGAATACTT
GCCTCTTGCTGATGATTTCCACCGCCCGCCCCCTGGTGTGGGTAACAATT
GGGGAGGGGGGTGCCGCCCCCGACAGATAGAGGGACAATTTTAGTGGTTA
TATTCCACTGGTGTAAGCACTAACAAAGACCCACCATTTCCCAGATAACC
AATTCTTTTAAAAGAACATCTGTTGAAACTGGCAATTTACAATCTTCTTA
AAATACTGAGCGACATAATTAACCCTCCAGGGAGACTAATATTAGTTTAT
TAGAGACAATTCCTACTTCTGTTTATTTTTTTACATTAAACGATTTGCTC
CGATTTTGTGGCCACTGCTTTTGTATTTCCCTCCTCTTTCCCCCTTTCTT
TCCTCCCTTTTTTTTTTCCCCCTCCCCCTTTTTTTTG

Query= MSMg01no209_j16.b1 MSMg01no209_j16.b1 CHROMAT_FILE:
MSMg01no209_j16.b1 PHD_FILE: MSMg01no209_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:47 2005
         (252 letters)



>mm_chr8_117383925_117384576
          Length = 652

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctatttagaccaggctgaccttgaatgcatagagactgcctgtttctgcctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggaattctctatttagaccaggctgaccttgaatgcatagagactgcctgtttctgcctc 484

                                                                       
Query: 64  ccaagtgctgggatcaaaggtgtgcttgccaatcacttttcctaaatactttgccaaaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ccaagtgctgggatcaaaggtgtgcttgccaatcacttttcctaaatactttgccaaaat 424

                                                                       
Query: 124 aatcctccaaaattgaggataagcctcctggtcaaacttagtcctgggctgtcagtagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aatcctccaaaattgaggataagcctcctggtcaaacttagtcctgggctgtcagtagat 364

                                                                       
Query: 184 atatttatttagaatatgtagggaaggggggtggacaggctagtctctgggaattcatac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 363 atatttatttagaatatgtagggaaggggggtggacaggctagtctctgggaactcatac 304

                    
Query: 244 tccatacac 252
           |||| ||||
Sbjct: 303 tccacacac 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no209_j16.g1 MSMg01no209_j16.g1 CHROMAT_FILE:
MSMg01no209_j16.g1 PHD_FILE: MSMg01no209_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:47 2005
         (214 letters)



>mm_chr8_117282574_117283187
          Length = 614

 Score =  383 bits (198), Expect = e-111
 Identities = 210/214 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaggcttgtatttctagaaagttctgatcacctagtctccctcttcccagtaaagcag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gcaaggcttgtatttctagaaagttctgatcacctagtcttcctcttcccagtaaagcag 260

                                                                       
Query: 61  aatagaggtgaccataagctaaggtctggagctgagggttatcgcagaaggaaggggaca 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 aatagagatgaccataagctaaggtctggagctgagggttatcgcagaaggaaggggacg 320

                                                                       
Query: 121 caacgtgacattggaatggtctaagctggccttggaaacccctacagcttgctggcctca 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgtgatattggaatggtctaagctggccttggaaacccctacagcttgctggcctca 380

                                             
Query: 181 cagtgccagctggaatacttgcctcttgctgatg 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgccagctggaatacttgcctcttgctgatg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)