BAC Information

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BAC

Clone NameMSMg01-211M14
Chromosome8 (Build37)
Map Location 64,927,528 - 64,972,603
singlet/doubletdoublet
Overlap geneLOC384830
Upstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Downstream geneLOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211M14.T7 (MSMg01no211_m14.b1)MSMg01-211M14.TJ (MSMg01no211_m14.g1)
ACCAG393378AG393379
length1,2671,268
length of high quality
(start - end)
425 (29 - 453)376 (72 - 447)
definitionCHROMAT_FILE: MSMg01no211_m14.b1 PHD_FILE: MSMg01no211_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:14 2005CHROMAT_FILE: MSMg01no211_m14.g1 PHD_FILE: MSMg01no211_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:37:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,927,528 - 64,927,935)(64,972,231 - 64,972,603)
sequence
NCCACACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTTACATGCCATATACATACATAAATACATGCACACATGCATACACATA
CACATGGAAGTTATTGCAAAATTCTGTCTAAAGAACTGTTAGATATTGTA
ATCTAAAACTAAACGGCTATGATTCTTTCATTATAAAGTGAGTTAAAAGA
AAAATTTGTATAGCCCAATACAAATTCAGATGAGGAAAAACATTTGAATG
TTCAAAAACACAGGGCAGAAAATACTCAACAACACCTGACTTGGGACCAA
ACTTAATGGTAACTTTTTCTCTGGATTTCTGATTTCTTACTATAAAGACA
GTAACTGAGAAAATGCTAAGCTATGTGTGATATGTGTATGTCATCGAATG
ATACATAATGGCTCTAAAATTGTTTTTTAATGAGAAAACCATTGGAGGAT
AATTTTTAAACCTCCCCCTACCCTGCAGCATAATGTATAATATATAAAGT
ATGGTGGCCAAGCATTGCCTCAATGAGAAGGATAACTCTGAAAAATTATA
CAAAGGAAGAGTCAAATTATAAAGAAAGAAGAAAATGACCTGGGAAGTCT
TGAAGGATGCATGCTTGGAATGGGCCATAGTTAGAGAAGGAAAAATAGAA
GATGACGTTGGAGAAAAGTAAGGGACTCATAAGAACATTACACAGCCATT
CAACCAAAGAGCATTCAGGGACTGGTCCGAGGCTCCAGCACAAATGTAGC
AGAGGGCTACTACTTCTGGCCTCACTGGGAGAGGATGTGCCGAATCTTGA
AGAGTCTTGAAGCTTCAGGAAATGAGGGGTTACCTTCTTAGAGCTAAAGG
GGAGGGTGGATGGCCAGAGGACCTATTTCAGGTTTGACCTGAAGAGGGGG
CCACATTTGGGAATATAATAAATAAACCATTAACACCACCTTACCTACCA
TTTTCTGTTAGACTAAAACTAAGAACCCATAGACATATTCTCTTATTCTC
CCTTTCCTAATAGGGTGTAAAGAGCCACGAAAAACCTGGGTGAAATTTCC
ATTGGCCAGGAACTGTCTTAATATTTCCTAATTAACAAGGCATGGACCCC
CCCAGCCATAACTAAAAAAATGATTTTTTCCGGATAAACGAAATTAAAAA
GTTTTTCCCGCNAAAAAATTCTCTTTAAACATTGGCGCCATCTCCCATCT
GATTTAAAACAATAACCTCTCCAAAACGGCTATTTGCNTCGCCTCATTTT
ACTCTTCACTCATAAGA
NNNTTAGTCACGGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTGAGAAAGTTAAAACATCTCATATTT
GAGAGCTTAAACTTAAAAACAAATCTAAATACTGAATCCTATTGTCTCTG
CCCATTTATATTTTGGAAGTCTTTGTTTAGAAAGCATATAAAGCCAAGCA
GTGTCCCTCGTTACAGTATCTCTAACACATATCATGGATGCTTTGGAGGT
GGGGCTCATTTTAACTGACCCTGATCATGGCACCAGAGTCACATGCCAAA
TCCCAGTTGATTAAGGAAGCTTTACAGATGCAGAACAAGAAGAAAATAGA
ACTATCAGAGCTGTGCCTATAAATACAGTGTGCGGTGACAGGCTGTTCTT
ATGTATTTATTAAATGAAAAATGGTTTTTTCACTTCGACTGCTGAATTTT
TTTTTTTTTCCCCCCCCCCTCTCCGNCAATACCCTTTCAAAAAAAAAGGG
GGCGCGGTTATGGTACTCNGGACCAGCAAAGGCACCTTTGTCGCAATAAG
AATTTATCCTTAAAACTTTACAGGAAAAGATAAATTGAGGTCATATTTGT
AGCAGAAGAGTGGTTTTTACTTGTGAGGATCACTTTGCTATTTAGTACCC
CAGGGACAAAAGAGAAAAGATAAGGACCGTCTACAAGTCCCATGAAAGAA
CAAAAAGCAAAGGACAGTCCACAAGTTTCCTGACCCAATTCCGTGCTGTG
CTCAGCCCAAACAGATGACCTTAATTTCTGAACTCTCTCCCAAAGACATT
CAGCTTTATCTGAACCTGCCTCCAAATGCTGCTCGTTTCTGAACCCCTGT
TTGCCAAAAAAAAACTGACATAACCTTTTAAATATTTTAAACCCCCCTGG
CATTCAAAGACTTTTCTTCTTTTGTACACCGTATCCTCCGTTCAAATCCT
TCTAAAATGATGAAAAAAATGTGTTTCTCTAAAACTTTTCTTATACTCCT
AAGCATCTAGGTCAACAAAAACACTTTACTTTCTGCCCCCCTTTTTTACA
CCTTAAACAACATTTGTTTCTTCATATTCTTAAACTTTGTTTTCACGGCC
CCTTTACACACTGTAAATCATATCTCCTATCTATTCTGTTTATGTTTTCA
CAAATTTCTCTTTTCTCCCTACAATACATTCCGTACTACGCTGTTCCTCT
CTCCTTATATTTCTCCCTATTCTTCTTTTCTCTTTCCTCTTTCTGTTGTA
CTAATTTCTCCCTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_m14.b1 MSMg01no211_m14.b1 CHROMAT_FILE:
MSMg01no211_m14.b1 PHD_FILE: MSMg01no211_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:14 2005
         (425 letters)



>mm_chr8_64927311_64928135
          Length = 825

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  gaattctttacatgccatatacatacataaatacatgcacacatgcatacacatacacat 77
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 218 gaattctttacatgccatatatatacataaatacatgcacacatgcatacacatacacat 277

                                                                       
Query: 78  ggaagttattgcaaaattctgtctaaagaactgttagatattgtaatctaaaactaaacg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggaagttattgcaaaattctgtctaaagaactgttagatattgtaatctaaaactaaacg 337

                                                                       
Query: 138 gctatgattctttcattataaagtgagttaaaagaaaaatttgtatagcccaatacaaat 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gctatgattctttcattataaagtgagttaaaagaaaaatttgtatagcccaatacaaat 397

                                                                       
Query: 198 tcagatgaggaaaaacatttgaatgttcaaaaacacagggcagaaaatactcaacaacac 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 398 tcagatgaggaaaaacatttgaatgttcaaaaacacagggcagaaaatactgaacaacac 457

                                                                       
Query: 258 ctgacttgggaccaaacttaatggtaactttttctctggatttctgatttcttactataa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgacttgggaccaaacttaatggtaactttttctctggatttctgatttcttactataa 517

                                                                       
Query: 318 agacagtaactgagaaaatgctaagctatgtgtgatatgtgtatgtcatcgaatgataca 377
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 518 agacagtaactgagaaaatgctaagctatgtgtgatatgtgtatgtcatcgaatgaaaca 577

                                                           
Query: 378 taatggctctaaaattgttttttaatgagaaaaccattggaggataat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 taatggctctaaaattgttttttaatgagaaaaccattggaggataat 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no211_m14.g1 MSMg01no211_m14.g1 CHROMAT_FILE:
MSMg01no211_m14.g1 PHD_FILE: MSMg01no211_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:37:14 2005
         (376 letters)



>mm_chr8_64972031_64972806
          Length = 776

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgagaaagttaaaacatctcatatttgagagcttaaacttaaaaacaaatctaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 acttgagaaagttaaaacatctcatatttgagagcttaaacttaaaaacaaatctaaata 514

                                                                       
Query: 61  ctgaatcctattgtctctgcccatttatattttggaagtctttgtttagaaagcatataa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 513 ctgaatcctattgtctctgcccatttatattttggaagtcttagtttagaaagcatataa 454

                                                                       
Query: 121 agccaagcagtgtccctcgttacagtatctctaacacatatcatggatgctttggaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agccaagcagtgtccctcgttacagtatctctaacacatatcatggatgctttggaggtg 394

                                                                       
Query: 181 gggctcattttaactgaccctgatcatggcaccagagtcacatgccaaatcccagttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gggctcattttaactgaccctgatcatggcaccagagtcacatgccaaatcccagttgat 334

                                                                       
Query: 241 taaggaagctttacagatgcagaacaagaagaaaatagaactatcagagctgtgcctata 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 333 taaggaagctttacagatgcagaacaagaagaaaatagaactatcagaactgtgcctata 274

                                                                       
Query: 301 aatacagtgtgcggtgacaggctgttcttatgtatttattaaatgaaaaatggttttttc 360
           |||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||||
Sbjct: 273 aatacagtttgcggtgacaggctgttcagaagtatttattaaatgaaaaatggttttttc 214

                        
Query: 361 acttcgactgctg 373
           |||||||||||||
Sbjct: 213 acttcgactgctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)