BAC Information

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BAC

Clone NameMSMg01-212I22
Chromosome8 (Build37)
Map Location 123,747,524 - 123,902,449
singlet/doubletdoublet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212I22.T7 (MSMg01no212_i22.b1)MSMg01-212I22.TJ (MSMg01no212_i22.g1)
ACCAG393871AG393872
length776781
length of high quality
(start - end)		314 (40 - 353)279 (70 - 348)
definitionCHROMAT_FILE: MSMg01no212_i22.b1 PHD_FILE: MSMg01no212_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:21 2005CHROMAT_FILE: MSMg01no212_i22.g1 PHD_FILE: MSMg01no212_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,902,140 - 123,902,449)(123,747,524 - 123,747,799)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TAGGCCTTAAAGATTCTTCCCAGTGAGCTCCCAGGTGTCCTCCTGAGGCC
CTGCAGAGGCCTCTGCCGTGGGTGCGTTCCATTTGTCAGGGCATGGGGTG
ATTCTCTGGGCACCCCTGGAAGTGGCCCGCAAAGTTCAAGGCTGAATGCC
CGGCTCTCATTATCAGATCTAATTGTGGGCTCAGATTTCACCAACAGGGT
GTGCAGGTGGGGGCCGAGGCAGGGGTCAACGCCTAAAAGCTTATTAAATC
TCTGATGTGACCGGTAAGGCCCGTCTGGAGGCCATTTGACAACTCAAGTG
CTATTTTCACCTCCCGGNACCAGNCCCTACGGAAAGTGAAGATGGTTTTT
CCATTTGTTCCCCCCCAAAAAAAAAAAAAAAATTTTTCTCGTTTGTGGTT
TTTTTTTTCCCTCGCTATAATTTACCACCCCATTTCCTTTTCTCACTTCT
CCCTCTCTTCTTTCATCTTTATCCGATTTACTTCTTTATTCTTTTTTCCT
TTCTTCTTCCCCTTCTTTTTCCCTTTTTAATTCTTTCTTTATCATTATTT
CCACCCCCCTCCCCATTTATACTACCTATTATACTATAATTATTACCCAT
CTTTTATTTCCCCGCTTCCTTTATATAAACTCTATCCGCCCTCTCCCACT
TTCGCTTTAATTATAATTAACCCCCTTACTTTCCCTATTCCATTCTCATC
TGCACTTTTCTTTACATCCCTCTTTN

ACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAGGTGGCAGCGGAGGGGCAGTGGAGAAGG
CAACCTGCTGTGGGCGCACGATGGCCTCTCTGCCAAGTGCTTCATGATGT
CTTGACCATCACCAGGTGATATGCTCATCCAGGAGCTCTGGGAGGCGAGC
CAGCTGCTTCATTCACTGCCTGCTGAACAAGTCCTGGGCACAGCCACAGA
TGCTGTGAATCAAACCCAGGGTGCCTGGTTACCTTGTGTTTCAGATGCCA
TAATTGAGTTGGTATTTTGTGTCTGTTAGAACAAATTGCCAAGTGNGTGT
GTGNGNNGTGCCCCTGAGAACAGAAAAACCCAAAAANNTATTTTAAANNN
NNNNNNNTTTTNTCCCCCCCCCTTATAATTATTAAAAAAACTTGCGGTGG
GGGGGGGCGTTCTTCCCCTTCCCCTCCCCTTCTCCCCTTCCCGTTCTTGT
CCTTTTCCACTCTCGTCCTTTTTCCCCGCCCCTTTCCCCTTCTTTCACAT
GTCTTTTACCTCTCCCTTTTTTTTATCCCCATTTTCCCTCTCCGCTTTCC
TTTTTTTCTACCTTCTTTACCACCCCCACCTTTTCCATCTTTTACTTTCC
TCCTATCCCTNACCCCTTCAAAAATCATATTTATTTTTTATTTCCCCTCA
ACTTCTCCTCTTCTCTTCCTGCTTCCCCCTCTCCTTTCTTTTATTATTTC
CCCCCTCTTTTTTCTTCCCGCCCTCATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_i22.b1 MSMg01no212_i22.b1 CHROMAT_FILE:
MSMg01no212_i22.b1 PHD_FILE: MSMg01no212_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:21 2005
         (314 letters)



>mm_chr8_123901936_123902649
          Length = 714

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaggccttaaagattcttcccagtgagctcccaggtgtcctcctgaggccctg 64
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcttaggccttatagcttcttcccagtgagctcccaggtgtcctcctgaggccctg 455

                                                                       
Query: 65  cagaggcctctgccgtgggtgcgttccatttgtcagggcatggggtgattctctgggcac 124
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ccgaggcctctgcggtgggtgcgttccatttgtcagggcatggggtgattctctgggcac 395

                                                                       
Query: 125 ccctggaagtggcccgcaaagttcaaggctgaatgcccggctctcattatcagatctaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccctggaagtggcccgcaaagttcaaggctgaatgcccggctctcattatcagatctaat 335

                                                                       
Query: 185 tgtgggctcagatttcaccaacagggtgtgcaggtgggggccgaggcaggggtcaacgcc 244
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtgggctcagatttcaccaatagggtgtgcaggtgggggccgaggcaggggtcaacgcc 275

                                                                       
Query: 245 taaaagcttattaaatctctgatgtgaccggtaaggcccgtctggaggccatttgacaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 taaaagcttattaaatctctgatgtgaccggtaaggcccgtctggaggccatttgacaac 215

                     
Query: 305 tcaagtgcta 314
           ||||||||||
Sbjct: 214 tcaagtgcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no212_i22.g1 MSMg01no212_i22.g1 CHROMAT_FILE:
MSMg01no212_i22.g1 PHD_FILE: MSMg01no212_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:21 2005
         (279 letters)



>mm_chr8_123747324_123748002
          Length = 679

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggtggcagcggaggggcagtggagaaggcaacctgctgtgggcgcacgatggcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggtggcagcggaggggcagtggagaaggcaacctgctgtgggcgcacgatggcctct 260

                                                                       
Query: 61  ctgccaagtgcttcatgatgtcttgaccatcaccaggtgatatgctcatccaggagctct 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ctgccaagtgcttcatgatgtcttgaccatcaccaggtgatatgcgcatccaggagctct 320

                                                                       
Query: 121 gggaggcgagccagctgcttcattcactgcctgctgaacaagtcctgggcacagccacag 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaggcgagccagttgcttcattcactgcctgctgaacaagtcctgggcacagccacag 380

                                                                       
Query: 181 atgctgtgaatcaaacccagggtgcctggttaccttgtgtttcagatgccataattgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctgtgaatcaaacccagggtgcctggttaccttgtgtttcagatgccataattgagt 440

                                               
Query: 241 tggtattttgtgtctgttagaacaaattgccaagtg 276
           ||||||  |||||||||| |||||||||||||||||
Sbjct: 441 tggtatcctgtgtctgttggaacaaattgccaagtg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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