TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAATGTGGTTCTCTTAAATTTGAATAAAAATTTACTGAGTTTAG
GAATCTTAAAACTACTAGAAAAGTACTGTGTCAACTTGATGTTGAGTTGC
TATAAAATGTTAATGATGCTGACCCATTACATCCCTTCTAAAAAACAACA
CAAAATGAAAAAAAAAAAGCACAACAAAATGGCATTTTACTTAGCATTCA
TTTTTATCTCATTTACTTTTATGGCATTTCTTAAAACTGTCTAAAGTTTA
TAGAGCAATTAAACTATGTTCCCAGTAAGGGAAATCACACACACACACAC
ACACACACACACATGCACACACATACAGTCCAAGTAATTTTAGAGAGAAG
CCTCAGTTTCCTATTATTTATTCAAATCAAGAGTTTTAGTTCTATAAACT
ATGTAGTTCCTACTATAATGACTCTGGTCAACATAATGATAATTATTTCC
TTTTGTATATCAGAGAATGATAGAGTATGATTCTAAGATTAACCAACAAT
GAATTTTACTGTAAATTAAAGGATCTTCCACTATTGCTCTTTGTTTGAAT
GGTTATTTATTTTGTGGCATAGAATGAATCCTGAATTGAATTGAATGAAA
AACACCAACATTAATCTGATCTTTANATGATAACATAGCACTATTGAAAA
AACCTAATTAAATATTTAACTGGTAGAAA

TCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGTCCAAAAAGGGGGAG
TGGGTGGGGCAGGNGGAGTGGNGGGTGGGTCGCCNNNNNNNNNCNCCNNN
NNNNNNNNNNNNCNNNNNNNNNNNNNNNNNNNNNNNCCNNCAACNNCCCC
CCCCCCCCCCCCCNNCCCCCCCCCCCCCCNNCCCCCCCCCTTCCCNCCNC
CNNCCCCCCCCCCCTTTTTCCTTTTTTTTCCCCTTTTTCCCTTTCCTCCT
TTTTTCCTCTCCCTTTTTCCCCTCCCCTTTCCCCCCCCCCCCTTCTTTTT
TTTTTCCTTCCCCCCCCCCCCCCCCCCCCCNCCNCCCTTTTTTTTTCCTT
CCCNGNGCCGNGGNNCCCCCCNNNNNNNANTNNNANNNNNNNNNNNGTGN
NNGGGGTGGGGGCCCCCCACAAAAAAAATAAAAAAATAAATTCCGCGGGG
GGGGTGGGGGTCCTGCTCTTTCCTATCTCCCCCCTTCTCCTTCTTTCCCT
CTGTTTCCGCCCCGCCTCGCATTCTTTTTGTCCCCCCTCCCCTCTCGCGC
CGGGGTTGTCACTTTCTCTTCTTTCGTCGCCCAACTGCGCGGTTTTCTGT
CTCGTTTACCCTTTCCCGTTCTCTTTCTCATGTTCCTCCAGCGTTCATGT
GACCATTCTTTCCTCTTCGCTCTCCGTCGTTTGCCTTCTCCCTCTTTCTG
ACTCTCGTCGGCCGTCCTCCGTTGTCGTTTATTTCTTCTCCCCACATCGC
CTTATTTCCCCTCTCCGCCTGCCGTCATTTTTTGCTCCGCGCTTTTGCGT
GTTTACCCGGTCCTTCGTCTTTGTGTACTTTGTTCCTGT

Query= MSMg01no214_l02.b1 MSMg01no214_l02.b1 CHROMAT_FILE:
MSMg01no214_l02.b1 PHD_FILE: MSMg01no214_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:06 2005
         (684 letters)



>mm_chr8_61476951_61478034
          Length = 1084

 Score = 1232 bits (637), Expect = 0.0
 Identities = 674/698 (96%), Gaps = 19/698 (2%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcaatgtggttctcttaaatttgaataaaaatttactgagtttaggaatcttaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aattctcaatgtggttctcttaaatttgaataaaaatttactgagtttaggaatcttaaa 246

                                                                       
Query: 66  actactagaaaagtactgtgtcaacttgatgttgagttgctataaaatgttaatgatgct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 actactagaaaagtactgtgtcaacttgatgttgagttgctataaaatgttaatgatgct 306

                                                                       
Query: 126 gacccattacatcccttctaaaaaacaacacaaaatgaa-aaaaaaaaagcacaacaaaa 184
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 307 gacccattacatcccttctaaaaaacaacacaaaatgaagaaaaaaaaagcacaacaaaa 366

                                                                       
Query: 185 tggcattttacttagcattcatttttatctcatttacttttatggcatttcttaaaactg 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgacattttacttagcattcatttttatctcatttacttttatggcatttcttaaaactg 426

                                                                       
Query: 245 tctaaagtttatagagcaattaaactatgttcccagtaagggaaatcacacacacacaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctaaagtttatagagcaattaaactatgttcccagtaagggaaatcacacacacacaca 486

                                                                       
Query: 305 cacacacacacaca------------------tgcacacacatacagtccaagtaatttt 346
           ||||||||||||||                  ||||||||||||||||| ||||||||||
Sbjct: 487 cacacacacacacacacacacacacacacacatgcacacacatacagtctaagtaatttt 546

                                                                       
Query: 347 agagagaagcctcagtttcctattatttattcaaatcaagagttttagttctataaacta 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agagagaagcctcagtttcctattatttattcaaatcaagagttttagttctataaacta 606

                                                                       
Query: 407 tgtagttcctactataatgactctggtcaacataatgataattatttccttttgtatatc 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtagttcctactataatgactctggtcaacataatgataattatttccttttgtatatc 666

                                                                       
Query: 467 agagaatgatagagtatgattctaagattaaccaacaatgaattttactgtaaattaaag 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agagaatgatagagtatgattctaagattaaccaacaatgaattttactgtaaattaaag 726

                                                                       
Query: 527 gatcttccactattgctctttgtttgaatggttatttattttgtggcatagaatgaatcc 586
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 727 gatcttccactattgctctttgtttgaatggttattcattttgtggcatagaatgaatcc 786

                                                                       
Query: 587 tgaattgaattgaatgaaaaacaccaacattaatctgatctttanatgataacatagcac 646
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 787 tgaattgaattgaatgaaatacaccaacattaatctgatctttaaatgataacatagcac 846

                                                 
Query: 647 tattgaaaaaacctaattaaatatttaactggtagaaa 684
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tattgaaaaaacctaattaaatatttaactggtagaaa 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)