Query= MSMg01no215_p06.b1 MSMg01no215_p06.b1 CHROMAT_FILE:
MSMg01no215_p06.b1 PHD_FILE: MSMg01no215_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:45 2005
(313 letters)
>mm_chr8_49054476_49055188
Length = 713
Score = 474 bits (245), Expect = e-138
Identities = 289/309 (93%), Gaps = 9/309 (2%)
Strand = Plus / Plus
Query: 5 gaattcatctatctgtacaattcttgttactttagtaaactctctgagcctgggaaactt 64
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 214 gaatacatctatctgtacaattcttgttactttagtaaactctctgagtctgggaaactt 273
Query: 65 catagagaccacttcatagagtggtttagacacctcggtgttctgggagttcacattagc 124
| ||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 274 cgtagagac---------gagtggtttagacacctcagtgttctgggagttcacattagc 324
Query: 125 atcagctgggctctgacgaggaccccctgggacagaatcacaatggcaggagcctgtgca 184
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 atcagctgggctctgacgaggacccccagggacagaatcacaatggcaggagcctgtgca 384
Query: 185 agaggaagggccagacaggaagccacaggaggatggggctcgagctccagtgttggtagc 244
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 agaggaagggccagacaggaagccacaggaggacagggctcgagctccagtgttggtagc 444
Query: 245 catcagtctagcaagaaggactaggtccctagataacagcctcatccccttcagatgcag 304
||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 445 catcagtctggcaagaaggactaggtcccaagagaacagcctcatccccttcagatgcag 504
Query: 305 cagccctga 313
|| ||||||
Sbjct: 505 caaccctga 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no215_p06.g1 MSMg01no215_p06.g1 CHROMAT_FILE:
MSMg01no215_p06.g1 PHD_FILE: MSMg01no215_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:45 2005
(286 letters)
>mm_chr8_49226845_49227524
Length = 680
Score = 445 bits (230), Expect = e-129
Identities = 270/286 (94%), Gaps = 6/286 (2%)
Strand = Plus / Minus
Query: 1 aatccctgaaattcacccaaaagccagatgtaacagcacatgtctgcggcgcagcccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 480 aatccctgaaattcacccaaaagccagatgtaacagcacatgtctgcggggcagcctgct 421
Query: 61 tcagaacaagggggacagagagaccccacagctaggaagttcttctctgacctctgcatg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 420 tcagaacaagggggacagagagaccccacaactaggaagttcttctctgacctctacatg 361
Query: 121 tgccccctcaccccaaacgccagttttaagagaccacaatgtaacaccccaccaccccca 180
|| ||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 360 tgtcccctcaccccaaacaccatttttaagagaccacaatgtaacccccc-ccaccccc- 303
Query: 181 gtcctggagagaatggtatcgacacttcaggtattctctgagcacaaacccgtgtaatgt 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ----tggagagaatggtattgacacttcaggtattctctgagcacaaacccgtgtaatgt 247
Query: 241 gctttgcagactacacagaaactacacaagcagagctgggcatata 286
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 246 gctttgcagacaacacagaaactacacaagcagagctgggcatata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 680
Length adjustment: 9
Effective length of query: 277
Effective length of database: 671
Effective search space: 185867
Effective search space used: 185867
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
