BAC Information

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BAC

Clone NameMSMg01-217C16
Chromosome8 (Build37)
Map Location 70,343,139 - 70,401,657
singlet/doubletdoublet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217C16.T7 (MSMg01no217_c16.b1)MSMg01-217C16.TJ (MSMg01no217_c16.g1)
ACCAG396788AG396789
length1,289702
length of high quality
(start - end)
425 (28 - 452)240 (128 - 367)
definitionCHROMAT_FILE: MSMg01no217_c16.b1 PHD_FILE: MSMg01no217_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:32 2005CHROMAT_FILE: MSMg01no217_c16.g1 PHD_FILE: MSMg01no217_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,343,139 - 70,343,545)(70,401,421 - 70,401,657)
sequence
NNTTCCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCTA
TATAACATACAACCAGGTCCTGATGTGCTTGGACATTAAGATATTGGGCT
GCTGCCCCCCTCTGTTAACCAGCCCAGGGAAAGGGAACTCTGGAGCCTTT
GATTTTCTGATATCATGACAGGCTGCGTTCCACTTCCCTTCACTGTCCCC
ACCTTTTCTCTGAAGCCTCAGGGCGCCAACTATTCTATAAGCACACTGAC
AAATGTGAGTGGAATTTGGTTTAAAATAATAATAGAAAATAAATTTAGAA
GCACTTAGGGCTCAGCTGCCTCTAGGGATGCATGGAGTTCAGAGTCTATG
CTATCATTTTGTCTTCTTCCAGGCATGCCTTTCTCACCTCAAGTTATTGG
TTAGGAATGTAATGGCTTTATAGTTTATAGAGCATGTTTCAAAGATATAT
TTTTATGTCCCCCCCCCCGTGCAATAATGCTAATCGTTAATAAAATAAGC
AATTGTAGCTAGAGCATATTATAACCATTTCTATCCACTGTAACATTCAA
GGTGGGACCACAAAGATTCTGCATCACAACAGAGTCCAAGCAGCACACTG
CATATAAATGGAGTCTCCTCAGAGAGGGCAAAACAGACAGCACTTATTAT
TTAAGCCTATGTATATTTGCCAGTCTCCATAGATGGCTTTAGAATTTCTC
CTGAGGTGGTTTTCTTTTCTCTAACAAGTGGTTACTAAAACCAGTGAGAA
AGAAAAATATATCTGATAATATGACATCCAACTCCACTTCTGGGAGAAAT
GGAAGGAATGTATTATTTTTGTCCCATTGCTGCTCAACTGGTATAAGCTA
GCCTTTACCTCTAATAATTTATACCCACTTGCATCTGCTTAATACCTACA
ACACCATCACCTGTAAGATAAGGAAGGTCAGTCTAGGATGCTTAAAACAA
CTAAATCCAGCCCTTAATGCTGTACTACATGATAGGGTAAATCTCCCCAA
AACTGCAAATGCGTGTAACTTTCTCCACCCGGATTTTGGGTTCCAAACCC
TTACCCTTGTTCGGTCAAGGCCTTCTCAGTCTCATGACCATAACTAAAGG
GTCCCCTAATCCTCCTAGCTCCCGAAAAACCTATCCCCTTTGAATCCGGA
GGCCTCCAACTCCTTTGTGTCCTGGTTCTCTTATTTGCATTCCTATACCC
ATCACTCCCTCCCCTCCGTTATAATCCCATATTTTATTCCTAATTATTCT
TTCAATTATAACTTCTCTCACCCTATATATCTTCTTACC
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAACTGCTTGATCTGAGTTAT
ATCCGGAGTATGTAGTTGTATAATCCCAACTTATGGGTGGTATTTAAGTG
TAGCTATAAAAAGAGCATCAACTGCTGCCTGGAGTAGGTGAGCTCTCAAA
GAGAAGGTCATGTAAACCTGGTAGCAACAGTATCTATGGAGGAAAGGGCT
TTCGAAGCTTGTGCTAGTATAAGGAGGAGAGCCTTTGAAACAAAAAGCTA
TGGTAGTGAGCTTTTTCTAGAGAACAGCATTAACGGTGATGGCTCAAAAT
ACAGACGCTCCCTGTCTCTTTTCACCGCGCCCCCCCCAGCTGAGCGGTGG
GATGAAAGGCGTGTTTCTGTTTCTGCCTTCTCTCCACGGAAGTCTGGAAG
CACGCTGCTGCCTTCAGGCCTGAGACCATCACGGACAAGATAATGATAAT
TTGTATGGCTCAGAGCTCGAATGAAAGATGGAGATGAGAATGAGGATGAG
TCCTTGAAGTAGCTGAAAATCTGCAAATCATGGTATACTTACTAAATAAA
AGGTCCTCCATAGAAGAAGCCTGTTAGAACAGTAGGGTAGAACAAATGCT
GCGTACAGAGTGCAGACAGGTTCTTTTTTCACCAAAAGGAAACTTTGGGT
GG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_c16.b1 MSMg01no217_c16.b1 CHROMAT_FILE:
MSMg01no217_c16.b1 PHD_FILE: MSMg01no217_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:32 2005
         (425 letters)



>mm_chr8_70342924_70343748
          Length = 825

 Score =  779 bits (403), Expect = 0.0
 Identities = 406/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattctatataacatacaaccaggtcctgatgtgcttggacattaagatattgggctgc 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattctatataacatacaaccaggtcctgatgtgcttggacattaagatattgggctgc 275

                                                                       
Query: 76  tgcccccctctgttaaccagcccagggaaagggaactctggagcctttgattttctgata 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgcccccctctgttaaccagcccagggaaagggaactctggagcctttgattttctgata 335

                                                                       
Query: 136 tcatgacaggctgcgttccacttcccttcactgtccccaccttttctctgaagcctcagg 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcatgacaggctgcgttccacttcccttcactgtccccaccttttctctgaagcctcagg 395

                                                                       
Query: 196 gcgccaactattctataagcacactgacaaatgtgagtggaatttggtttaaaataataa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcgccaactattctataagcacactgacaaatgtgagtggaatttggtttaaaataataa 455

                                                                       
Query: 256 tagaaaataaatttagaagcacttagggctcagctgcctctagggatgcatggagttcag 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tagaaaataaatttagaagcacttagggctcagctgcctctagggatgcatggagttcag 515

                                                                       
Query: 316 agtctatgctatcattttgtcttcttccaggcatgcctttctcacctcaagttattggtt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtctatgctatcattttgtcttcttccaggcatgcctttctcacctcaagttattggtt 575

                                                          
Query: 376 aggaatgtaatggctttatagtttatagagcatgtttcaaagatata 422
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aggaatgcaatggctttatagtttatagagcatgtttcaaagatata 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no217_c16.g1 MSMg01no217_c16.g1 CHROMAT_FILE:
MSMg01no217_c16.g1 PHD_FILE: MSMg01no217_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:32 2005
         (240 letters)



>mm_chr8_70401221_70401860
          Length = 640

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttatgggtggtatttaagtgtagctataaaaagagcatcaactgctgcctggagtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aacttatgggtggtatttaagtgtagctataaaaagagcatcaactgctgcctggagtag 378

                                                                       
Query: 61  gtgagctctcaaagagaaggtcatgtaaacctggtagcaacagtatctatggaggaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgagctctcaaagagaaggtcatgtaaacctggtagcaacagtatctatggaggaaagg 318

                                                                       
Query: 121 gctttcgaagcttgtgctagtataaggaggagagcctttgaaacaaaaagctatggtagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctttcgaagcttgtgctagtataaggaggagagcctttgaaacaaaaagctatggtagt 258

                                                                    
Query: 181 gagctttttctagagaacagcattaacggtgatggctcaaaatacagacgctccctg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagctttttctagagaacagcattaacggtgatggctcaaaatacagacgctccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)