BAC Information

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BAC

Clone NameMSMg01-217M17
Chromosome8 (Build37)
Map Location 68,541,645 - 68,696,953
singlet/doubletdoublet
Overlap geneMarch1
Upstream geneTrim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217M17.T7 (MSMg01no217_m17.b1)MSMg01-217M17.TJ (MSMg01no217_m17.g1)
ACCAG397197AG397198
length1,2731,260
length of high quality
(start - end)		423 (28 - 450)384 (72 - 455)
definitionCHROMAT_FILE: MSMg01no217_m17.b1 PHD_FILE: MSMg01no217_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:34 2005CHROMAT_FILE: MSMg01no217_m17.g1 PHD_FILE: MSMg01no217_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,696,538 - 68,696,953)(68,541,645 - 68,542,026)
sequence
NNGGGCTATGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAC
TTTTTTTTTTCTTTTTGGTTTTTTGAGACAGGTTTCTCTGTATAGCCCTG
ACTGTCCTGGAACTCACTTTGTAGCCTCAGAAATCTGCCTGCCTCTGCCT
CCTGAGTGCTGGGATTGAACACAAGAAACCAGAGTGAAGTTTTCCTTATG
CTGTAGATAGCATAGGTTTAAAGTCTTGGACTATGCTGTCCTATTAAAAC
ATCAGCTGTCAGCTATTTTGTCTCGGCGTAGTGGTTGATAACTGTGGTAG
AGTAAGGATGATTGCTAGTGTGGAGAAATGGACATAATGTGCACACAGAC
ACATGGATTTCCAAGTGTAGAGGCATTTGTCTTATTCTTGTGAGTGATTT
TTATATTTGACATGGACCAAGAAGGCTAATGCTACACATGTGGGTAGATT
TTTTTTACCCCCCCCCCCTGGAGAGCTCCAAAGCGAATAAAAAAGTAGCT
CCTCCTGGCAGAGTTTCTCTTTTTGCATGGATTTCATAGAACTGAGATCT
TGAGGTAGGAGGCCTTATCATTTAACCTCTCCAGCTCGCCTACTGATAGG
CTTGCTTTGTTACATCCATATGGCTTGAATGTGAGCCTATAGCTACCTAC
GTGTGTGGCCTGTGTGCTGGGTGCCTGCTGGTGTCTTCGGCCCTATGGGC
AGAGTGAAGAGAGGATCTCTTACCTGTGATTCCTCTCATGCCACCTTTGT
GGCCTTCCGTCTTTCTTAGGCATGGGAGCTCGAATATCACATGCTTTCTT
TCACTGTCTCCATCACTTTTATCATTCTGTCTGAAACAACTGTACTAATA
AAGTATTTCTAAATTAACTAATCTATTGCCGATGACATTTGTTAGAATCA
ACAAAGTTTAAATGATATGGATGCTCCCACAGTAGTCTTTATTGTTTTCT
TATAGTGGTGATCTCTCTTTTTTTAAGAATATATCTCTTATTGTATTCAC
TATTAATAAAATTCTGCCTTCCAATTTTTAATTGGTTTTTTTTGTCTCCC
CCCTTGTTTTCTGATCTCTTTTTAATTTTTATTTTGATGAATATCCTTTA
ATTTATGCTTGCTGTGTTTTTCCTATTTTTATTTTTTCTTTTTAAGTTTT
TTTATTTCATAAACTTTTTTCTATATCTATATATTATATATATATTATTC
ATTATATTAACCTTATTTTGTTCTGTTTACCTTCTCTTTTCTCTTTTCTG
ATAACATTATTTGTTTTTTGTTG

NNTTTTTCACTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTTATCATGCGGAAGGAAGTCCTAGCA
GCAACTGCAGTGAGTCGGAGAACCTGTGTCCTTATCAGGAACACTGAATG
TGAATGAGAGCAGCAAAGCTTATGGCTAATTTATCTGCTTCACTGTTTAA
TATGAGTGTGCTTGCTGAAAGATTTCCAAGCAATCCCTCAGGGTTTGGGA
TGTGTGTCCAGGGAAATAAGCATGTAGAATCTATAATTTCAAGCAGGTTG
GAAAATGAACCTATGTTATTTGAAGGAAGACTCATAAAGCAATAGAAATG
ATACGTGTTACCTCTTTGTTTCATTACATTTTTATTGAGGTGTGCCACAT
TTATTTTTCCCTACCTCACAGTAAGTTGCTCATTTGACTTGGAACTCAAA
ACATTTTTTTTTCCCCCCCCCCGCTGGTAGACACTCTATTTCAAAAAAAG
TGTTGAATGCCACTTCTGTTGAATTAAATCAACAGTTTAACAGTTATTTT
AAAATATCTTATAACATGTACTCTGTACCAAAAGCCATCAAGCACTTACA
TAAATCATGAATCCCTTAGTCAATGTTACCTCCATGTCTTTGGTAGTTGA
TTCTTTGCTTTCACAGATGACGAAACAGATAAACTTGCATTTAATTCTTG
AGAGACAAACCAGAAAACTTAGGCAGTGTCTCTGAAAAACCAGTGGTAAA
TGGAGATCAACCAATTGGGCAGAATTTGGGACGGTATTGTAAATGATTTG
TATGTAATGAGGGAGACCCCAAATTTACGCAAGCAAGAGGACCAGAGTTT
ATAAACCGGAAGAGTTATCTAGAGTGTAAAATTGTATCAGTCGTTGGTGT
TTAACATGCATCATTTCTTTCAATGTGAATAGAGGAGCTTCCCAATTGTT
GCACATCTGTCTCGTTTACCATGCAGCGCGCTTGTTTTCCTGGAGCCTTT
TCCTCCCCCAACCAAATTGATTCCTTTTTCTATCTTAAATTTTTTATAGC
CCTTTTCCCAAACTTATTTTTTATGTTTTAAAAAAGGTCTTATCTGCCCC
TTCTTTTATATAATTCCCCTATTACCCCCCAATTTTTTTTTCTCCTTATA
TGAAAATCTCGTTTTTATAATTTATTAATTTTATCAATCTATTCCCTCTT
TCTTCTTCTCTCTCACATCTATTTCTCCTTTCTAATCTATTACGCTCTTA
TCATTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_m17.b1 MSMg01no217_m17.b1 CHROMAT_FILE:
MSMg01no217_m17.b1 PHD_FILE: MSMg01no217_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:34 2005
         (423 letters)



>mm_chr8_68696196_68697018
          Length = 823

 Score =  634 bits (328), Expect = 0.0
 Identities = 390/420 (92%), Gaps = 18/420 (4%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattcacttttttttttctttttggtttttt---------gagac-aggtttctctgta 65
           ||||||| ||||||| || || ||||||||||         ||||| |||||||||||||
Sbjct: 758 gaattcaatttttttgttgttgttggttttttttttttttcgagacaaggtttctctgta 699

                                                                       
Query: 66  tagccctgactgtcctggaactcactttgtagcctcagaaatctgcctgcctctgcctcc 125
           |||| |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 698 tagctctgactgtccgggaactcattttgtagtctcagaaatctgcctgcctctgcctcc 639

                                                                       
Query: 126 tgagtgctgggattgaacacaagaaaccagagtgaagttttccttatgctgtagatagca 185
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 638 tgagtgctgggattgaacacaagaaacaagagtgaagttttccttatgctgtagacagca 579

                                                                       
Query: 186 taggtttaaagtcttggactatgctgtcctattaaaacatcagctgtcagctattttgtc 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 578 taggtttaaagtcttggactatgctgtcctattaaaacatcagctgtcagctatcttgtc 519

                                                                       
Query: 246 tcggcgtagtggttgataactgtggtagagtaaggatgattgctagtgtggagaaatgga 305
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcggtgtagtggttgataactgtggtagagtaaggatgattgctagtgtggagaaatgga 459

                                                                       
Query: 306 cataatgtgcacacagacacatggatttccaagtgtagaggcatttgtcttattcttgtg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cataatgtgcacacagacacatggatttccaagtgtagaggcatttgtcttattcttgtg 399

                                                                       
Query: 366 agtgattttt----atatttgacatggaccaagaaggctaatgctacacatgtgggtaga 421
           |||||    |    ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agtga----taaagatatttgacatggaccaagaaggctaatgctacacatgtgggtaga 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no217_m17.g1 MSMg01no217_m17.g1 CHROMAT_FILE:
MSMg01no217_m17.g1 PHD_FILE: MSMg01no217_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:34 2005
         (384 letters)



>mm_chr8_68541445_68542228
          Length = 784

 Score =  677 bits (350), Expect = 0.0
 Identities = 374/382 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttatcatgcggaaggaagtcctagcagcaactgcagtgagtcggagaacctgtgtcc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttatcatgcggaaggaagtcttagcagcaactgcagtgagtcggagaacctgtgtcc 260

                                                                       
Query: 61  ttatcaggaacactgaatgtgaatgagagcagcaaagcttatggctaatttatctgcttc 120
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 261 ttatcaggaacactgaatgtgaaagagagcagcaaagcctatggctaatttatctgcttc 320

                                                                       
Query: 121 actgtttaatatgagtgtgcttgctgaaagatttccaagcaatccctcagggtttgggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtttaatatgagtgtgcttgctgaaagatttccaagcaatccctcagggtttgggat 380

                                                                       
Query: 181 gtgtgtccagggaaataagcatgtagaatctataatttcaagcaggttggaaaatgaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgtccagggaaataagcatgtagaatctataatttcaagcaggttggaaaatgaacc 440

                                                                       
Query: 241 tatgttatttgaaggaagactcataaagcaatagaaatgatacgtgttacctctttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgttatttgaaggaagactcataaagcaatagaaatgatacgtgttacctctttgttt 500

                                                                       
Query: 301 cattacatttttattgaggtgtgccacatttatttttccctacctcacagtaagttgctc 360
           ||||||||||||||||||||||||| |||||||   ||||||||||||||||||||| ||
Sbjct: 501 cattacatttttattgaggtgtgccccatttatccatccctacctcacagtaagttgttc 560

                                 
Query: 361 atttgacttggaactcaaaaca 382
           ||||||||||||||||||||||
Sbjct: 561 atttgacttggaactcaaaaca 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 784
Length adjustment: 9
Effective length of query: 375
Effective length of database: 775
Effective search space:   290625
Effective search space used:   290625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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