BAC Information

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BAC

Clone NameMSMg01-217O21
Chromosome8 (Build37)
Map Location 117,366,599 - 117,366,952
singlet/doubletsinglet
Overlap geneWwox
Upstream geneAdamts18, Nudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217O21.T7 (MSMg01no217_o21.b1)MSMg01-217O21.TJ (MSMg01no217_o21.g1)
ACCAG397282AG397283
length1,2742,231
length of high quality
(start - end)
370 (29 - 398)---
definitionCHROMAT_FILE: MSMg01no217_o21.b1 PHD_FILE: MSMg01no217_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:47 2005CHROMAT_FILE: MSMg01no217_o21.g1 PHD_FILE: MSMg01no217_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACATCTTTGGGCGCTAAAGACTCCTATAGGGAGAGGATCCGCGGAATT
CCCTTTATTGGATTTTTATTGTAATTTTAAAAGATTTATTCCTTGTCATA
AATGAGTGCACACTGTCTGCACTAGGGCCCATGAGCCACCGTGTACGTAT
AGAGGTCAGAAGACAAATCAATGAGGCTATTTCTATTTTTGTATGAGTTT
CTGAGTGGAACTCAAGCCATTAGGCTTGTAAATGTGTGTTTATTCACTAG
CCACCTCACAGGTCCTGGCTTATTAATTATTATAACTAACATTGTATCAG
TCCAGCACATCTTTCTTGCCACTCACATACCTGTTTCCAGCATTCTGTTC
TCTTTCGAGACACACCCGTCTCCCTCCTTGTGACAAGATACCAGACCATG
TTTTTTAAAAAGCACAACTCTTCCTGCCAGCCTTGGATATAGGAAGAGTT
TTTTTTCTTCCCCCCCCCCCTNTNAGNNNCTANCCCAAAAAAAAAAAGGG
TCGNGGAGNCATGATACCAAGTCCTTCCAGGGACTCGTCCTGCAGTCGGT
AGAGGCGCTTTGGCACACCTGTGCCCTACACAGCTCACATCCTGCCACTT
CGATGCTGTACTGTCTTCCCAGGCACCACAGGAAAAGGCTGCCCATTGCA
GATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATGTGACCTGCATAGATAGAGAA
CCAGACCGAGCCCGCTAAGGTGAAGCAGGCCCAGAGACAATTGGAGCCCT
TGGGATCACCAGCCCATTCGTTTTTCTCTTAAGCTGCAAACAAATGACGT
TCCCTGCTTTTCTCCCTCTACAGCGGAGAAGTGGAGCTGCCCCTTGAGCC
CTTTGCTCTGTCCGAGTGTGTAATCAGAAACCTTGTGGAAGTCTCAGTCT
CCTCCTCCCACCAATGGGGAAATTATCTATTTTGATGAAGAAATCCGAAA
GTGCTCCTTAATGTCTCCCATCTAGAGGTTTTTTAAAGTTACTTTTCCAA
CATGCCCTTTCCTGTGGCTTAATTAAGGGCCTTCTCTTTAACCCGGCCCC
CGGGTTTTTTCTCCTTGGGTATCCCTTGGGGCCTTTTTTTAACCCCCACT
TTTTGAAAAATTACTCCGTGGGGCTATTTCTTTATTTGCTGGGATTCTTT
TTTTCCCCTCTCACCTCTGTGTTAATTTTTACTTGTGATAATTTTCTCCT
GAAATCCTTCTCCTTCTTCCCTCC
CAGGGAGGTAGTATTCTGTGTGGTTTTCTTNCAGTTTGTTAATATATAAT
TTTAAGTGGGGGGGACACTTTAGTAAGAGGGGAACTGCGGGGGGGAAAAC
CCCTTGTTAAGGAGAGGGGATGGATGTTTTGGTGTAGTTTCTCCCGCAAA
ATGTTATCTTATGTGTAACTCCCTTATGAGAAAAGGGATTATGTTGCCCC
GCCCCCGTTGTTGGGTGGAATTTTTTGGTGTATGAGTTAATAGGAGAAGA
TATGGTCTTAGTATATTGTAGCATTTTAGGGAAGAATTTGGTATCCCCCC
CGTGTGAGTTGTGTATCAGTATGGTGGATAATAATTTTAAGATATTTTGA
TATGTTAGAAAAGGGAGTGGAAAAAGATTTCGGTATTGGGAGATTATTAA
TTATTTTTTTGATTTTATTATTGATATTGATTGTGGATGGGGTGGGTAGT
AAAGTGGTGATATGTTAGTGTTTGTGAGAAACGGGAATGTGGTAGATGTT
GAGAGATTGAGAATTAATTATTGTTTTGTGATTGTGTGAGTGTATTAATT
GTTTTTTGATGAGAGTGGGGGGGAAGAATGTGTTATTGTTAGAGTGTTAT
ATATTATGGTGTTTGTGGATAGATATGGGATGTGTTGTGTAGTATGTATT
GTTTGTGTGAGATAGTGGGCGAAGGTGTGGAAAGAATTTGTTTTTTTTTT
TTTTTTGTGAGGTGTGGGTATGTTTATATGGATGTGAATATATTATTAAA
TGGAATGGGGTAGATGGAGAAAAGAGAAGAAGAAAGAGAAATTTTAGAAG
GTGGCCGCCTTGGGGNCGGGGANNGCCCGGGAGGTGATGGGTGTTGGNTT
NTTTTTTTTTTTAAAATTTTTGGAGGTTNNNTTGATNTTTTGGGGGTTTT
TNNTNNTTTTTTTTTTTAATTAATCCTTATGTTTATATGATGATTGGATT
GTTTATAATTGTGTTGTGAGTGTGATTGTGAATGTGAGTTTTGTGTTGAT
AGGTGAAGATGAGTTGGATTGTAATAGAAGGTATGTGTAGGTGAGTTGGG
GGATGGTTTTGTGATGGATAAGGGAATGATTGTAAACATGTGGTTTGTGT
AGTAAGGTGATATGGGATAAGATAATTATGTTTGTGGCGTAGTTAAGATG
TGTTGGTAGTATGAGTGTCTGTGTGGATAGATTGGTGGGATGGGAGATTG
TATGTATATTGTATGTAATGAGAGAGATGTATGTTATGTAAAGATTGAGT
TTGTTGTTAGTGTTATTATTAGTGGTGTTATGTAATGTGATATGTGATAT
TTAGTAGTAAGGGTGTAAGTGGTTGTGGTGATGAGTATGGTGATGTTAGG
GAGTTTGTTAAGGTTATTGGTTTATATTTTAATTTAGGTGGTGAGGGAGT
ATGGAGATTGTAGGTTATGTGTTTATATGTATTATATGATTGATGAGGAG
TGTTATTTTGTAGTGTTTTTATGGATGGAAGNAGTATTTTTATTGTATGT
ATAGTAGTAAGATGATTTTGTGGATGAGTGTAATTGAATGTGACATGTTT
GATAGATGGGTTTAGATTTAGAATAGTTGGTAGTAGTTTGTGTTGATAAG
ATAGTTATTGTGGTATAAGATGTTGGTGAGGATTGATAGTGGTGATTTAT
AGTATGTAGTTGAGGATGTTAGTGATAATATATGTGTTATGTAGTAAGAG
ATAGGTGTAATTATTGTTTTGAATTGTGGTATTAATGTGAATGGTATAGT
GATATTGAGTTATAAATGAAGTAGATGAGAATGCTAGTTAGTGTGGGATT
TGTATATATGTGTGTGGTGGGTAGATGTAGAATTGTAATGGTGAGAATGT
AAAGAGTATAATTAGTATGATGTGATGTAGGTAGTGAGAATTGTGTAGTA
GAGTAGTGTTAGAGATGGTAGTAGTATATGTTGGGTTTGATGTTTGTTGG
TNAATAGACTGTTAGTCTGGTGAAATGTTTCGTCTGTGGTGGAGTTGAGA
AGGTGAATGGCTTGGATGTGTAGATAGTATGTGGGATTGTTTCTAAGAGT
AGTAGTGGTTGTGNGTTATTGTAGGATTATGTGTATTGTGGTTGTAGAAT
GTTATTTAATATTGATTTGTGTTTGTATGTTGGATGAGTATATGTATTGA
TGTTGATCTATGTGTGTATGGAGTGTATTGGTCTTGTGTAGTCGGAGTGT
NTGTATATAGTTGATTGTGTAATGTGTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_o21.b1 MSMg01no217_o21.b1 CHROMAT_FILE:
MSMg01no217_o21.b1 PHD_FILE: MSMg01no217_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:47 2005
         (370 letters)



>mm_chr8_117366383_117367152
          Length = 770

 Score =  638 bits (330), Expect = 0.0
 Identities = 348/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 17  ggaattccctttattggatttttattgtaattttaaaagatttattccttgtcataaatg 76
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 217 ggaattccctttattggatttttattgtaattttaaaagatttattcattgttataaatg 276

                                                                       
Query: 77  agtgcacactgtctgcactagggcccatgagccaccgtgtacgtatagaggtcagaagac 136
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agtgcacactgtctgcactcgggcccatgagccaccgtgtacgtatagaggtcagaagac 336

                                                                       
Query: 137 aaatcaatgaggctatttctatttttgtatgagtttctgagtggaactcaagccattagg 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aaatcaatgaggctatttctatttttgtatgagtttctgagtggaactcaagccattagg 396

                                                                       
Query: 197 cttgtaaatgtgtgtttattcactagccacctcacaggtcctggcttattaattattata 256
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 397 cttgtaaatgtgtgtttactcactagccacctcactggtcctggcttattaattattata 456

                                                                       
Query: 257 actaacattgtatcagtccagcacatctttcttgccactcacatacctgtttccagcatt 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 actaacattgtatcagtccagcacatctttcttgccactcacatacctgtttccagcatt 516

                                                                 
Query: 317 ctgttctctttcgagacacacccgtctccctccttgtgacaagataccagacca 370
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 517 ctgttctctttcgagacacacccgtctccttccttgtgacaagataccagacca 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)