Query= MSMg01no218_g16.b1 MSMg01no218_g16.b1 CHROMAT_FILE:
MSMg01no218_g16.b1 PHD_FILE: MSMg01no218_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:25 2005
(319 letters)
>mm_chr8_82446268_82446985
Length = 718
Score = 540 bits (279), Expect = e-158
Identities = 303/311 (97%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 5 gaattctcctgtatctcgagatctgtcctgttcagacatcgagtttaactataacatgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattctcctgtatctcgagatctgtcctgttcagacatcgagtttaactataacatgct 455
Query: 65 gattacctgtctcaaaaagttgaaatagtagacttcaaaatcaaagattctagtgactca 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 454 gattacctgtctcaaaaagttgaaatcgtagacttcaaaatcaaagattctagtgactca 395
Query: 125 agacctgaaatttccatcataaacagtagatactaaggaaacataaattaatcttcctgt 184
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 394 agacctgaaatttccatcataaacaatagatactaaggaaacataaatta-tcttcctgt 336
Query: 185 cccaggaaatgtaaagacttagaggatgatgggtgaggaagagctggtataaatcagtaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cccaggaaatgtaaagacttagaggatgatgggtgaggaagagctggtataaatcagtaa 276
Query: 245 ggagagccagcatggatgtcccacccaaaggcagatattagagccagaagatgtagggga 304
||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |
Sbjct: 275 ggagagccagcatgggtgtcccacccaaaggcagaaagcagagccagaagatgtagggaa 216
Query: 305 agcggagaagg 315
|||||||||||
Sbjct: 215 agcggagaagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no218_g16.g1 MSMg01no218_g16.g1 CHROMAT_FILE:
MSMg01no218_g16.g1 PHD_FILE: MSMg01no218_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:26 2005
(282 letters)
>mm_chr8_82340121_82340802
Length = 682
Score = 476 bits (246), Expect = e-139
Identities = 270/280 (96%), Gaps = 6/280 (2%)
Strand = Plus / Plus
Query: 3 tgctgggagttaggaaggcatcactcctggggaccctggcaccacaagataaattcatct 62
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 203 tgctgggagttaggaaggcatcactcctggggaccctggcaccagacgataaattcatct 262
Query: 63 tgtggaagaaggatttatgttcccatacaactacatgtgtgtctcctaacctaccttcct 122
||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 263 tgtggaaga-ggatttatgttcccatacaactacatgtgtgtctcctgacc---cttcct 318
Query: 123 accttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tccttccttccttccttccttccttccttccttccttccttccttccttccttccttcct 378
Query: 183 tccttccttcctttctttctttctttctttctttctttctttctttctttctttctttct 242
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tccttcct--ctttctttctttctttctttctttctttctttctttctttctttctttct 436
Query: 243 ttctttctttctttctttctttctttctttctttctttct 282
||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttctttctttctttctttctttctttctttctttctttct 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 175
Number of extensions: 61
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
