BAC Information

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BAC

Clone NameMSMg01-231L13
Chromosome8 (Build37)
Map Location 58,157,382 - 58,157,666
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L13.T7 (MSMg01no231_l13.b1)MSMg01-231L13.TJ (MSMg01no231_l13.g1)
ACCAG398452AG398453
length725707
length of high quality
(start - end)
320 (46 - 365)287 (58 - 344)
definitionCHROMAT_FILE: MSMg01no231_l13.b1 PHD_FILE: MSMg01no231_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:04 2005CHROMAT_FILE: MSMg01no231_l13.g1 PHD_FILE: MSMg01no231_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTC
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTTAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATATTTTTCAGCGTCTCTGCCTTTATGTGAAGTTCTTTGAT
CCATTTAGATTTGACTCCCACACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGTTCAGGTATGGTGATTCCACCAGAGGTTCTTTT
ATCCTTGAGAAGAGCATTTGCTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTAAGAATTCCTCCATAATTCTCACATCTTTGTACTTCTCTA
GCTAACCTTTCTTTTGATTAATGCTTTTGATCTTTAGAAATGATAATATA
TTGTGCAATTAAATCATGTTGGCCTAGGAACCATTAAATAACTTTAAATT
TAATAGTGCGTATATCCCCTTTAAATGTTAGGGCCACATTATATTATTTT
TTGATTCACCAGACACTCCAGTCATTTACCATGCTTTCAGACTCTAATTT
ATGACCAAGTAATAAGAACAGATATATATTTACTCTAGGTCCTTCTTTCT
GCCGCCCCCCTCCCTCGACAGTCACTGTGTTCTACAGCAGTATCTTAACT
GCACCATTGACCTCAATTCCTCTAAAGCCATCCATTCAAATATATTTATT
CATAGACTTATAAAACACTTGCTGACAGCCAAGTATGAATCAAAATTGGT
TTATTTATTCTGAAAACTGAGAAAGTATGACCTACCTGTTAATATTGCAT
TAAAAATAAGTATGTAGCTATTTAGTATTCTAGATGGTACTGTGCCTTTC
AAACCCAAATAGAAGAGGATTAGGAGAATATGAACAAACCTTGGAGGGAT
GGTATTATTTTGCACGAATGAAAAAAAATGCCTTCATTGACAAATCATAT
CTGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l13.g1 MSMg01no231_l13.g1 CHROMAT_FILE:
MSMg01no231_l13.g1 PHD_FILE: MSMg01no231_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:04 2005
         (287 letters)



>mm_chr8_58157182_58157868
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagaattcctccataattctcacatctttgtacttctctagctaacctttcttttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaagaattcctccataattctcacatctttgtacttctctagctaacctttcttttga 260

                                                                       
Query: 61  ttaatgcttttgatctttagaaatgataatatattgtgcaattaaatcatgttggcctag 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ttaatgcttttgatctttagaaatgataatatattgagcaattaaatcatgttggcctag 320

                                                                       
Query: 121 gaaccattaaataactttaaatttaatagtgcgtatatcccctttaaatgttagggccac 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gaaccattaaataactttaaatttaatagtgcttatatcccctttaaatgttagggccac 380

                                                                       
Query: 181 attatattattttttgattcaccagacactccagtcatttaccatgctttcagactctaa 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 attatattattttttgattcaccagacactccaatcatttaccatgctttcagactctaa 440

                                                        
Query: 241 tttatgaccaagtaataagaacagatatatatttactctaggtcc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatgaccaagtaataagaacagatatatatttactctaggtcc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)