BAC Information

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BAC

Clone NameMSMg01-232G08
Chromosome8 (Build37)
Map Location 129,051,317 - 129,051,600
singlet/doubletsinglet
Overlap genenone
Upstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653
Downstream geneIrf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1, Pard3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G08.T7 (MSMg01no232_g08.b1)MSMg01-232G08.TJ (MSMg01no232_g08.g1)
ACCAG398919AG398920
length730729
length of high quality
(start - end)
311 (47 - 357)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no232_g08.b1 PHD_FILE: MSMg01no232_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:52 2005CHROMAT_FILE: MSMg01no232_g08.g1 PHD_FILE: MSMg01no232_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTATCCCGGTCTCATAGTCCATACTCTCCAACATTAATGTATG
TATGTTCTAGTTCTGCCTCTGTCTGCCTGCCTCTGAGGTTGTGGTTTAAT
GAGAAACGTCCCCACAGGTTATACATTTGAACCCCTGGTTCTCAGTAGGT
GGCGTTTGGGGAAGTTTAGGTTTATGGCCTTGCTGGAGGAAGAACGTCAC
TGAGGGCAGGCTTTGAGAGTTCACAACTCCACCCTATTTCCAGTTCTGTT
CCCTGTTGGGATCTCTCATCTTCCTCCTCCTGCTGCTTGCTGCCAGGCGT
CCTCAGTTTGTATTTCTCCCCACCCCCCCACCATAAGCCAAGACAAACTC
TTCCTTCTGTAACCCCCACGAGAATAGAAAATCAGTCACTAACCAGGGGC
TACTGGGTATTAATCCCTGGGTTCTCGTGTATGCCAGGTGAACACATTGT
CCCCGATCTCTGTCCCCAGCATGTAATGCGTATTTTAATCTGCCACATAG
ATAATTTGCCACATAGAATTGTTCTCACGTTGTTTGTGGTTTTTGATACA
AAGTCTCAGGCCCATGATGACTGCTTCGACCTCTTATACCCGATACACTC
TCGTATGTCTCCCCCTCCAATTGCTGTTATTATAAATACAGCTTCCTCTG
TTTATATCCCTGCCCCGCTTTCCCCTCCCC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGCTGGCCTTGA
ACTCACAGCGATCCACCTGCCTCTGACTCCTGAGTTCTGGGATCAAAGGT
GCATGCCACCACCGCCTGGCAGCTTACACCTTTTCCACACTGACTCCTTG
TCAGCTGCCAGAAAGCCAGTCTCTACCTCTTTGCTCAAGGCTGAAAAGGG
CTGGACTTGTGAGAGCTCCGGGTCACTTTCACTGCCTTTCAGGGACCAGC
ATCAAACACTTCCCTCTTTATGAAGGGACGCCTCCCTGCTGGAGACCATG
CCCCTCCTTATTTTCCCCCCTCCCCCCCTTAGCCAGAGAAGATAAGGACC
TGCCAAGTCCTCCCCGACCCTGATCTGAAGCTCAGTCAGGATGTCCTGTT
GAGTTGCGATGCTGTGTCCTTGAGAATTAGATTGTTGTTGTTTTGAGGCA
GCCATCTCGACCGGACTCATGTCTGATGGAGCCGTCCTCGCCCTCGTCTG
GATTCATTGAGGAGTTCTGCTGCTGCCGGGTCTATTTGAGATATGTAACA
TAAACAGCTCCAAGGAGATGGCTTTCCCGGCTTTTGTTTTTCCTCTTTGT
CTCCTCAAAGCATTGCCTGCGTGCCGTTGCTGGCCGTCTCTGTACTGTTT
TGACAACAAACAGCCCTGCCTTGACCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g08.g1 MSMg01no232_g08.g1 CHROMAT_FILE:
MSMg01no232_g08.g1 PHD_FILE: MSMg01no232_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:53 2005
         (284 letters)



>mm_chr8_129051007_129051690
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaacaggctggccttgaactcacagcgatccacctgcctctgactcctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 actctgtagaacaggctggccttgaactcacagcgatccacctgcctctgactcctgagt 535

                                                                       
Query: 61  tctgggatcaaaggtgcatgccaccaccgcctggcagcttacaccttttccacactgact 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tctgggatcaaaggcgcatgccaccaccgcctggcagcttacaccttttccacactgact 475

                                                                       
Query: 121 ccttgtcagctgccagaaagccagtctctacctctttgctcaaggctgaaaagggctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ccttgtcagctgccagaaagccagtctctacctctttgctcaaggctgaaaagggctgga 415

                                                                       
Query: 181 cttgtgagagctccgggtcactttcactgcctttcagggaccagcatcaaacacttccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cttgtgagagctccgggtcactttcactgcctttcagggaccagcatcaaacacttccct 355

                                                       
Query: 241 ctttatgaagggacgcctccctgctggagaccatgcccctcctt 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctttatgaagggacgcctccctgctggagaccatgcccctcctt 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)