BAC Information

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BAC

Clone NameMSMg01-232G17
Chromosome8 (Build37)
Map Location 126,876,694 - 126,896,212
singlet/doubletdoublet
Overlap genePgbd5
Upstream geneSpire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2
Downstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G17.T7 (MSMg01no232_g17.b1)MSMg01-232G17.TJ (MSMg01no232_g17.g1)
ACCAG398936AG398937
length741742
length of high quality
(start - end)		696 (46 - 741)554 (71 - 624)
definitionCHROMAT_FILE: MSMg01no232_g17.b1 PHD_FILE: MSMg01no232_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005CHROMAT_FILE: MSMg01no232_g17.g1 PHD_FILE: MSMg01no232_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,876,694 - 126,877,385)(126,895,657 - 126,896,212)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAGTGAGAAATAATTGTCTAAAACATCTCATATGCAATTAAAC
CTAATATCTGGCCTTATGATTCCCCCTGGACTGTTAAATTAGCAAGCCAA
TCATTTTCATCTTTGATTATACATTCCTCCTGAGCGTTTAAAACCATGTC
AGTGGCCAGAATCAATCAAGGCCAGTTGAGAATCTACTCCCCGTCACTCC
TGGCCTCTGGATCCTCTAGAGCCCCATCCCCACCCCCTCACCGTTTATCA
GTTTTTCCGTCTAGGTGAGGTTAAGTTGAAGGCCTTGTTTGAACATTTTC
CTCCATATTGATCATCCTATTCATAGACTGGACCCTGCTTTGTGCTAATT
GGATGGGGTCTCCATGGCTTCCACAAACAAGAGAACAGGTGGTCCCCTCA
TAGTTACACAACATTTTGAGATAGGTTTGCACAGTCCCCTGGGACCTACT
TGACCTTGGAGGGCAAGGTGAAAAACAGCCTCCCATTTAATCTCATTAGT
ATGGCCTCCAAGTGTGGTTATAGGAAACCCAGAAGGCCAGTTACCCCATC
TTATATGCTTTAACTGCTGTGTAATAGTTAGATAAAGCTTGGGCAGAAAA
CAAACCTTGAAACTAAGTAGACACATCTTTTCCTTTTAAGCCAGTCCTTG
TGATTGCTATAGAGTTGCCCAGCAACTCCATCGACCTAAGC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGATCCCACCCACGCTGTGAACAGCCCAGAG
ACACTGCCGCTATTCCCACCCTCCCCCAGCCCCTGACCAAGTCATCCAAT
ATAGAGGGGAAAGAGAAGCCTTCTTCCCCTCACTTCTCCTCAGGCCTGTC
CCGGGAGCATCTGCATGTGCCTGTGACTGTGTCATTGTCCCTGTGCTCAC
GAAGCCACCGAGTCTAGGTAGCAGATAACTGTGCACTTGTCTGCCTCCGA
TGCCTCCTCACACCCACCGCTCTGCTGAAGCACGTGATGGACGGTGCTGG
TCCAGTGTCCCACCATGCCCCACGCCCAGGAACTGGGCAGCCTGGATGGG
GACTGAGCTCCTGCCTCCCCCACAGGCGTCATCATCAAGAGGAGGAGCGG
GGAAATCCCCTGCCCTCTGGCCGTGGAGGCCTTTGCGGCTCACCTCAGCT
ACATCTGCAGATATGACGATAAGTACAGCAAGTGAGTGTGTGGGCGGCTG
GGGTGCGTGGGCAGCTGGGGTGCGTGGNCAGCTGGGGGTGCGTGGNCAGC
TGGGGGTGCGTGGTCAGCTGGGGGTGTGTGTTCGTCTGGTCCCCCGCGAG
CTGCTGTTTCCTCGTGCTCAGCTGTTTGCGCCGTGTCCGCTTGCTCTTCC
TTTCCCTTTTTTCGCTTTTCGCATTCTCTTCCTTTCCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g17.b1 MSMg01no232_g17.b1 CHROMAT_FILE:
MSMg01no232_g17.b1 PHD_FILE: MSMg01no232_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:54 2005
         (696 letters)



>mm_chr8_126876490_126877585
          Length = 1096

 Score = 1330 bits (688), Expect = 0.0
 Identities = 691/692 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattagtgagaaataattgtctaaaacatctcatatgcaattaaacctaatatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattagtgagaaataattgtctaaaacatctcatatgcaattaaacctaatatct 264

                                                                       
Query: 65  ggccttatgattccccctggactgttaaattagcaagccaatcattttcatctttgatta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggccttatgattccccctggactgttaaattagcaagccaatcattttcatctttgatta 324

                                                                       
Query: 125 tacattcctcctgagcgtttaaaaccatgtcagtggccagaatcaatcaaggccagttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacattcctcctgagcgtttaaaaccatgtcagtggccagaatcaatcaaggccagttga 384

                                                                       
Query: 185 gaatctactccccgtcactcctggcctctggatcctctagagccccatccccaccccctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaatctactccccgtcactcctggcctctggatcctctagagccccatccccaccccctc 444

                                                                       
Query: 245 accgtttatcagtttttccgtctaggtgaggttaagttgaaggccttgtttgaacatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 accgtttatcagtttttccgtctaggtgaggttaagttgaaggccttgtttgaacatttt 504

                                                                       
Query: 305 cctccatattgatcatcctattcatagactggaccctgctttgtgctaattggatggggt 364
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctccatattgatcgtcctattcatagactggaccctgctttgtgctaattggatggggt 564

                                                                       
Query: 365 ctccatggcttccacaaacaagagaacaggtggtcccctcatagttacacaacattttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctccatggcttccacaaacaagagaacaggtggtcccctcatagttacacaacattttga 624

                                                                       
Query: 425 gataggtttgcacagtcccctgggacctacttgaccttggagggcaaggtgaaaaacagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gataggtttgcacagtcccctgggacctacttgaccttggagggcaaggtgaaaaacagc 684

                                                                       
Query: 485 ctcccatttaatctcattagtatggcctccaagtgtggttataggaaacccagaaggcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcccatttaatctcattagtatggcctccaagtgtggttataggaaacccagaaggcca 744

                                                                       
Query: 545 gttaccccatcttatatgctttaactgctgtgtaatagttagataaagcttgggcagaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttaccccatcttatatgctttaactgctgtgtaatagttagataaagcttgggcagaaa 804

                                                                       
Query: 605 acaaaccttgaaactaagtagacacatcttttccttttaagccagtccttgtgattgcta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acaaaccttgaaactaagtagacacatcttttccttttaagccagtccttgtgattgcta 864

                                           
Query: 665 tagagttgcccagcaactccatcgacctaagc 696
           ||||||||||||||||||||||||||||||||
Sbjct: 865 tagagttgcccagcaactccatcgacctaagc 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_g17.g1 MSMg01no232_g17.g1 CHROMAT_FILE:
MSMg01no232_g17.g1 PHD_FILE: MSMg01no232_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:54 2005
         (554 letters)



>mm_chr8_126895457_126896412
          Length = 956

 Score =  973 bits (503), Expect = 0.0
 Identities = 543/557 (97%), Gaps = 4/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatcccacccacgctgtgaacagcccagagacactgccgctattcccaccctcccccagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gatcccacccacgctgtgaacagcccagagacactgccgctattcccaccctcccccagc 697

                                                                       
Query: 61  ccctgaccaagtcatccaatatagaggggaaagagaagccttcttcccctcacttctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ccctgaccaagtcatccaatatagaggggaaagagaagccttcttcccctcacttctcct 637

                                                                       
Query: 121 caggcctgtcccgggagcatctgcatgtgcctgtgactgtgtcattgtccctgtgctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 caggcctgtcccgggagcatctgcatgtgcctgtgactgtgtcattgtccctgtgctcac 577

                                                                       
Query: 181 gaagccaccgagtctaggtagcagataactgtgcacttgtctgcctccgatgcctcctca 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaagccaccaagtctaggtagcagataactgtgcacttgtctgcctccgatgcctcctca 517

                                                                       
Query: 241 cacccaccgctctgctgaagcacgtgatggacggtgctggtccagtgtcccaccatgccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cacccaccgctctgctgaagcacgtgatggacggtgctggtccagtgtcccaccatgccc 457

                                                                       
Query: 301 cacgcccaggaactgggcagcctggatggggactgagctcctgcctcccccacaggcgtc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 456 cacgcccaggaactgggcagcctggatggggactgagctcctgtctcccccacaggcgtc 397

                                                                       
Query: 361 atcatcaagaggaggagcggggaaatcccctgccctctggccgtggaggcctttgcggct 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 atcatcaagaggaggagtggggaaatcccctgccctctggccgtggaggcctttgcggct 337

                                                                       
Query: 421 cacctcagctacatctgcagatatgacgataagtacagcaagtgagtgtgtgggcggct- 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 336 cacctcagctacatctgcagatatgacgataagtacagcaagtgagtgtgtgggcggctg 277

                                                                       
Query: 480 ggggtgcgtgggcagct-ggggtgcgtggncagctgggggtg-cgtggncagctgggggt 537
           |||| || ||||||||| ||||||||||| |||||||||| | ||||| |||||||||| 
Sbjct: 276 ggggggcatgggcagctgggggtgcgtgggcagctggggg-gtcgtgggcagctgggggg 218

                            
Query: 538 gcgtggtcagctggggg 554
           || ||| ||||||||||
Sbjct: 217 gcatgggcagctggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 956
Length adjustment: 10
Effective length of query: 544
Effective length of database: 946
Effective search space:   514624
Effective search space used:   514624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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