BAC Information

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BAC

Clone NameMSMg01-232G18
Chromosome8 (Build37)
Map Location 18,411,580 - 18,411,886
singlet/doubletsinglet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232G18.T7 (MSMg01no232_g18.b1)MSMg01-232G18.TJ (MSMg01no232_g18.g1)
ACCAG398938AG398939
length739743
length of high quality
(start - end)
315 (42 - 356)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no232_g18.b1 PHD_FILE: MSMg01no232_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005CHROMAT_FILE: MSMg01no232_g18.g1 PHD_FILE: MSMg01no232_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAACAACTCTCTTGGACCTAAGAAAGACATTTGCTCCAGAGCTCTCGTGC
ACATGGCAGCAGCAGCACACCACACCACACCACGTAAAAGTGAAAAGGAG
CTTTGGACTGTTTCCAGGTTGCTTTATTACGTGACATCATGAAACAACAC
TTGACAGATTCCTGCCACAGCTAAGAAAAGGGGAGCCGCATTATCTCCCT
GAACTGTGTGAGTTTAAGAGCAGAGGTCTGAACAGAGTGTTTGCAAAGAC
CCTCTGCTTCTTCTCTTCCTGCTAGGATGCCACAAAAGTCAAGGACACTG
TGCGTTTTTATCCCCCCCCCCCCCGTGCTGCCACTTAGTTTATACTGATT
ACAGGGATGAAACCGAAAAATAAAGCATGGGTATGAGGAGATATGCTCTA
CATTCTCGAGGATATCTATTAGGGAGCTCTGAACTCTGCAGCCTCAGGAG
AGCGGTGCATTCCTGTTCACACAAGGAGATAGGGAGACGACCATCAGGAG
TGTGACCAGAAGAACTTAAAATGAGGTACCACTTTTCCCTTTCCCATTTG
ATGCTCAGCTCCTTAAGGCCTCTCTGAGAACAGATGGGTGCCATTGATTC
TCTCTTTAGCACAACCTACAGAGAGAACCTGCATGCTCTCCTTCCTTCCA
GTCTGTCAGAACAGCGCTCACTGACTTTCTTCTCAAGCT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGACAAATATTACAATTTGGGTGAGCCT
TGAGGGCTATATGCAGATCACAACAAGCTAATCTCAAGAAGACAGACATA
TAGGATTCTAGTTATATGAGATAGCTGGCATGTTCAAATTTATCAAGATA
AAGTAGGATTGGATTTGTCAGGGTCTGAGGGATGGGGCATGGGGAGTCAG
TATTTAATGGGTACAGATTTTGACTTTTGCCACATTAAAAAAAATTCTGG
GATAGATGATGAATACAGTTATGTAACCAGAATGTTTGAATTGCCTTTGT
ACTGTGCTCTCAAATGCGCCTAACATGGTACATTTCATGTAGTATATAAT
TTTCAATAGAACACAATAGGTGATATTGTATTAAGACAAACAAAATACAA
TGGCTTTCTGAACTCCATCAGTCATTTAGATTTCCAAGAGACTTTCTGGA
ATTTTAAGAAGCCCCACCTCCTTCTGCTGGGGTTTGTATCCAACTGCCTC
CTTTTCCTTCCGCTGGGGTTTGGTGCCCAAACAAGTCACAGAAGTAAGTA
GAAGTTTTTAGCATCAGGCAGGGAAATGATTGGGAGACTCACATTTAAAA
ATTAAAGCCATCGCAGACTTTCTTGTTCTCAGGAAAATTTGTTCCTGAAT
TATTAATTCTGTTTTGCTCCCTTATTAAAATAAAGATAACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_g18.b1 MSMg01no232_g18.b1 CHROMAT_FILE:
MSMg01no232_g18.b1 PHD_FILE: MSMg01no232_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:54 2005
         (315 letters)



>mm_chr8_18411376_18412090
          Length = 715

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacaactctcttggacctaagaaagacatttgctccagagctctcgtgcacatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacaactctcttggacctaagaaagacatttgctccagagctctcgtgcacatg 264

                                                                       
Query: 65  gcagcagcagcacaccacaccacaccacgtaaaagtgaaaaggagctttggactgtttcc 124
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 265 gcagcagcagcacaccacaccacaccacgtacaagtggaaaggagctttggactgtttcc 324

                                                                       
Query: 125 aggttgctttattacgtgacatcatgaaacaacacttgacagattcctgccacagctaag 184
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggttgctttatcacgtgacatcatgaaacaacacttgacagattcctgccacagctaag 384

                                                                       
Query: 185 aaaaggggagccgcattatctccctgaactgtgtgagtttaagagcagaggtctgaacag 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 aaaaggggagccgcattatctccctgaactgtgtgagtttaagagcataggtctgaacag 444

                                                                       
Query: 245 agtgtttgcaaagaccctctgcttcttctcttcctgctaggatgccacaaaagtcaagga 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgtttgcgaagaccctctgcttcttctcttcctgctaggatgccacaaaagtcaagga 504

                  
Query: 305 cactgtg 311
           |||||||
Sbjct: 505 cactgtg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)