BAC Information

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BAC

Clone NameMSMg01-235A11
Chromosome8 (Build37)
Map Location 13,057,223 - 13,221,908
singlet/doubletdoublet
Overlap geneProz, Pcid2, Cul4a, Lamp1, Grtp1
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10
Downstream geneAdprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-235A11.T7 (MSMg01no235_a11.b1)MSMg01-235A11.TJ (MSMg01no235_a11.g1)
ACCAG400733AG400734
length715726
length of high quality
(start - end)
338 (378 - 715)294 (433 - 726)
definitionCHROMAT_FILE: MSMg01no235_a11.b1 PHD_FILE: MSMg01no235_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:14 2005CHROMAT_FILE: MSMg01no235_a11.g1 PHD_FILE: MSMg01no235_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:52:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,057,223 - 13,057,560)(13,221,615 - 13,221,908)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTGAGCTAACCAGGGTGTTGAATGTACACAGGTCCTTCTTCCTG
AACACAGTATCAACTCACCCGTTGCTAATAGAGATCCTACCCCCACCAGT
ATGTGGGTCTTAGCCCCAGCTTTGATTAGGAGCTCAGCAGTCTTTGCAAA
ACCTAAGTCCTGGCCTTATCCCAGACATTCAATTCTAAGTCCTAAGAGTG
AGCCTAACCCTATATAACACTATCATGCCATCCCAGCAGGTGTTCGTTGA
GTGGCATGATATGGTCGGACAGGGTTCAGGGCATGTCTCTCCCCTCTAGT
CTTCTATTGCTTCCACGCCCCCCCCTAAATGTAGAAACCAAGCCTACATT
CAGTAAATAGAGTAACTTTTTCCCAAAAGTACCTATAGCTTGAACTTTAC
ATAACTTTCCTAAGCAAAGTGTAAAGGTTCCAGTACAAAACTTCCCCCAA
ATCAAGAGCTGGACAGAGTCCTTTGTAAACAGATTTTGCAACATTTGGAA
AAGTCAAACAAAAACAACACTTGATTTCCTAGAACCATAGTGGCTGAGAG
TGAGGCCAGGGTCTGAGAGCAGAGCTGACCTCAGCAGCTGCAGCGGGGAC
AGTGATGTGGACCCTGGAGAACACCTGCTCTGTAGCGTGGTCCCCTGGCC
CTGCCTGCAGGTCAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCAGCACAGGGACAGGACTCA
GGAACATCCCTCAAGACCACCCCAGAGGCTGGAAAAGAGCCCAACTCAAG
GAGGCAGTCTCCAGGCTGGCAATCTAGCTACCCCAGGGAACCCTACGAAG
TCTTGTGGCCTGGCTTTGCAGAAAGAGACCCAGCGTCAGGGACAGGCCAG
CTACCCAGTACCTCAGGCTTCGGGACCTGACAGCACTGCTGAAGGAGTCC
TGACTGCTGGCACGAGTGTTTAGCCTCCCAGACGGGGCCCCTCATTTGGC
AATCATTAAATCCTGTCCCNNNACCANNCGCCCAAAGAAACCCAGAACCT
GGCTAGTAGCAGGACCACAGCCAGAAAACCTGGAGAACACACGTGACGCT
TCCTGGCTCACATCTAATGCTGGGAGCCACCCACTCTTCCAATCCCTTGC
CCAGGACGGGCCCCCAAGTGCCCCTAGGGCAGAAAAGGGCCTGTCAGACC
ATAAGCACCCCAGGTCGGTGCACTTTGCAAAGTATCGCGCCCAAAGCTTT
CGGGACCAGGCGGCCTTCGATCTGTCCTTCAGGCCCACAGCCCTCAGGGC
CAGTGATGCCTTTGAGCCTCCAAAGTGAGAGCTCACCTTGAGTCAACAAG
TCTGTCTCTAACTGAACGTGACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no235_a11.b1 MSMg01no235_a11.b1 CHROMAT_FILE:
MSMg01no235_a11.b1 PHD_FILE: MSMg01no235_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:14 2005
         (338 letters)



>mm_chr8_13057023_13057760
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtagaaaccaagcctacattcagtaaatagagtaactttttcccaaaagtacctata 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtggaaaccaagcctacattcagtaaatagagtaactttttcccaaaagtacctata 260

                                                                       
Query: 61  gcttgaactttacataactttcctaagcaaagtgtaaaggttccagtacaaaacttcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttgaactttacataactttcctaagcaaagtgtaaaggttccagtacaaaacttcccc 320

                                                                       
Query: 121 caaatcaagagctggacagagtcctttgtaaacagattttgcaacatttggaaaagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatcaagagctggacagagtcctttgtaaacagattttgcaacatttggaaaagtcaa 380

                                                                       
Query: 181 acaaaaacaacacttgatttcctagaaccatagtggctgagagtgaggccagggtctgag 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 acaaaaacaacacttgatttcctagaaccataatggctgagagtgaggccagggtctgag 440

                                                                       
Query: 241 agcagagctgacctcagcagctgcagcggggacagtgatgtggaccctggagaacacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagagctgacctcagcagctgcagcggggacagtgatgtggaccctggagaacacctg 500

                                                 
Query: 301 ctctgtagcgtggtcccctggccctgcctgcaggtcag 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctgtagcgtggtcccctggccctgcctgcaggtcag 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no235_a11.g1 MSMg01no235_a11.g1 CHROMAT_FILE:
MSMg01no235_a11.g1 PHD_FILE: MSMg01no235_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:14 2005
         (294 letters)



>mm_chr8_13221415_13222108
          Length = 694

 Score =  545 bits (282), Expect = e-160
 Identities = 291/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaacacacgtgacgcttcctggctcacatctaatgctgggagccacccactcttccaa 60
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 494 gagaacacacatgacgcttcctggctcacatctaaggctgggagccacccactcttccaa 435

                                                                       
Query: 61  tcccttgcccaggacgggcccccaagtgcccctagggcagaaaagggcctgtcagaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tcccttgcccaggacgggcccccaagtgcccctagggcagaaaagggcctgtcagaccat 375

                                                                       
Query: 121 aagcaccccaggtcggtgcactttgcaaagtatcgcgcccaaagctttcgggaccaggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aagcaccccaggtcggtgcactttgcaaagtatcgcgcccaaagctttcgggaccaggcg 315

                                                                       
Query: 181 gccttcgatctgtccttcaggcccacagccctcagggccagtgatgcctttgagcctcca 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 gccttcgatctgtccttcaggcccacagccctcagggccagtgacgcctttgagcctcca 255

                                                                 
Query: 241 aagtgagagctcaccttgagtcaacaagtctgtctctaactgaacgtgactttg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aagtgagagctcaccttgagtcaacaagtctgtctctaactgaacgtgactttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)