BAC Information

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BAC

Clone NameMSMg01-236A15
Chromosome8 (Build37)
Map Location 63,423,221 - 63,423,575
singlet/doubletsinglet
Overlap geneClcn3
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik
Downstream geneB230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236A15.T7 (MSMg01no236_a15.b1)MSMg01-236A15.TJ (MSMg01no236_a15.g1)
ACCAG401419AG401420
length734731
length of high quality
(start - end)
357 (68 - 424)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no236_a15.b1 PHD_FILE: MSMg01no236_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:30 2005CHROMAT_FILE: MSMg01no236_a15.g1 PHD_FILE: MSMg01no236_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATATACCATAGAGGACTCTGTATTAATTTTCACTTCTATAAATC
TGAAAATTTGTTTCTTCCCCGCTGAAGACCATTAAAACTATATCCTCAGC
CCTGAAATTATTGTAAAGAATTTACTACAGACATAAAAGTGGCTCATTCA
GTAAAGTGCTTGCTATTATATAAGCATGAAAATTTGAGTTCAGACCTTAG
AACTCATAAAACTCCAGGTGCAGCCATGAAATATTAGGGGAGCACAGATA
AGAGGACCCCTGGGGCTTGCTGGCTAGTCAATCTACCCAGTTAGAAAGCT
CCAAGTTCAGTGAGAGACCCTGCCTTCCACAAAAAAAGGGGGGGGGGGGG
AGGAAAAGAATGAGAAGGGGGGGGTTTTTTTGTCCGGGTGCCCTCCCTTC
CTTCTTTCGTTCTTCCGTTCCTTCTTCTCGCTCCTCTCTTTTTACATCTC
TCCTTTTCTTCCCCTTCCCCCTCCCCTTATCCTTCTCCCCTTCCCCTTCC
TCCCCCCATTCCCCTTCATTTCGGTACCCTTTTTCCCCCTTTACCTATAC
CCACTCTGCCCTTATATCACCCACCTTTTACTCTCTCACCAACCTGACTC
TTCCTTCCCCCTTGTACCCTACAAAACCTCTTTCACTTATTACCCTTTAT
TCTCATCTTTTTTCCACTCTTTACATCTCCCTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
ACTCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TGAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAA
ATCAGTTTGGCGGTTCCTCAGAAAATTGGACATAATACTACCAGAGGATC
CAGCAATATTTTTCCTGCGCCCCCCCCCCAGAAGATCTTCCAACCGGTAA
GAAGGACACATGCTCCACTATGTACATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACTGAGGAATGGATACAGAAA
ATGTGGTACATTTATACAATGGAGTACTACTCAGGTATTAAAAAGAATGA
ATTTATGAAATTCTTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACTCAATCACAAAGGAACTCACACAATATGTACTCACTGACA
AGTGGATATTATCCCAGAAACTTAGGATACCCAAGATATAAGATACAATT
TGTTAAACGCATGACACTCAAGAAGAACGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_a15.b1 MSMg01no236_a15.b1 CHROMAT_FILE:
MSMg01no236_a15.b1 PHD_FILE: MSMg01no236_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:30 2005
         (357 letters)



>mm_chr8_63423021_63423777
          Length = 757

 Score =  625 bits (323), Expect = 0.0
 Identities = 348/357 (97%), Gaps = 2/357 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactctgtattaattttcacttctataaatctgaaaatttgtttcttccccgctgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 aggactctgtattaattttcacttctataaatctgaaaatttgtttcttcaatgctgaag 260

                                                                       
Query: 61  accattaaaactatatcctcagccctgaaattattgtaaagaatttactacagacataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accattaaaactatatcctcagccctgaaattattgtaaagaatttactacagacataaa 320

                                                                       
Query: 121 agtggctcattcagtaaagtgcttgctattatataagcatgaaaatttgagttcagacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtggctcattcagtaaagtgcttgctattatataagcatgaaaatttgagttcagacct 380

                                                                       
Query: 181 tagaactcataaaactccaggtgcagccatgaaatattaggggagcacagataagaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaactcataaaactccaggtgcagccatgaaatattaggggagcacagataagaggac 440

                                                                       
Query: 241 ccctggggcttgctggctagtcaatctacccagttagaaagctccaagttcagtgagaga 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctagggcttgctggctagtcaatctacccagttagaaagctccaagttcagtgagaga 500

                                                                    
Query: 301 ccctgccttccacaaaaaaagggggggggggggaggaaaagaatgagaagggggggg 357
           ||||||||||||||||||||  |||||||||| ||||||||||||||  ||||||||
Sbjct: 501 ccctgccttccacaaaaaaaaaggggggggggaaggaaaagaatgag--gggggggg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)