BAC Information

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BAC

Clone NameMSMg01-236B21
Chromosome8 (Build37)
Map Location 66,288,833 - 66,288,998
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock3, LOC384831
Downstream geneEG244495, Tll1, LOC100040989, Cpe, Sc4mol, Klhl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236B21.T7 (MSMg01no236_b21.b1)MSMg01-236B21.TJ (MSMg01no236_b21.g1)
ACCAG401475AG401476
length735670
length of high quality
(start - end)
663 (73 - 735)166 (72 - 237)
definitionCHROMAT_FILE: MSMg01no236_b21.b1 PHD_FILE: MSMg01no236_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:36 2005CHROMAT_FILE: MSMg01no236_b21.g1 PHD_FILE: MSMg01no236_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:53:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCTTTATAATATTTCCCAGTTAAAAACAGCCTGTATGTCCCTCAAC
AGAGGAATGTATACAGAAAATGTGGTACATTTACACAATGAAATACTACT
CAGCTAATAAAAACAATGACTTCATGAAATTCACAGGCAAATGGATGGAA
CTTGGAAATATTGTCCTCAGTGAGGTAGCTTAGTCATAAAAGAACACACA
CAGTATTTACTCACTGATAAGTGGATACTAGCCCCAAAGTTCAAAATATC
CAAGATTCAATTCACAGACCATATAAAGACCAAGAAGAAGGAAGACCAAA
ATGTGGATGCTTCAGTGCTTAGAAAGGTGAACGAAATACAGGAGGAAATA
TGGAAACAAAGTATGGAGTGGAGACTGAAGGAAAGGCCACCCAGAGACTG
CCTCGCCTGGGGTTCCATCCCATATACAGCCACCAAACCTGGATGCTATT
GTGGATGTGCTTGCTGATAGAACTCTGATATGACTATCTCCTGAGAGGCT
CTGCCAAAGCCTGAAAAATACAGCAGCAGATGCGTATAGCCAACCATTGA
ACTGAGTGCAGGGTCCAGGATGGAGGAGTTGGAGGAGATACTGGAGGAGC
TGAGGGAGGTTGCAGCCCCATGGAGAAAGAAACAGTGTCAACTAGCCAGT
CTCCCCACTCCCAGGGACTGGACCACCAACCAAAG
GGATCCGCGGAATTCTTACTGGCAGATGAAAAAAATTTTACTCCCTTATG
CATTTTCTTAATTCCACCATAAGTGAATATCATAAAATTTAATTACCTTC
CATTTCTTATGATTGTATCTTTTCAATAGAATTCCTTTGATCTTTAATAT
GTAACCACCAATACTGTGATTCTCAGTATTGACATTGCCCTTTTATGGAG
TTTTTTGTTTTTTGTTTTTTTGGCTTTTTTTTTCTGGCATGGGGGCTGCG
ATATTTTAAGAGAACTTTCTAAGCACTGATATCTTTGATAATTATAATGT
ACTTGTTTTATTGCCACCCCCCCCCCTTGTAGAGGTTAGTGCTTTGATTC
ACAGCCCAGATTGCATGAACTTTAACTCGAGGTATATTTCTTAATACACT
TTACACATTAGAGATTATATTTAATTTTGTTTATATTTGTTATAGAGAAT
ATATTTAAATTTGACATCTTCCAACACGATACAACTATATTGTAATACAC
TGAGTTGTATATATGACAATAAACATTGAGTTATGTTACCCATTAATTGT
GTTCAACATACATTCATTCTTTTGAAATATCTGTACTTTTTAGGGCTCTT
CGCCTTGTAAATATTTCTAATAACCTTTGCGAACTAATGTGAACAGTTGT
TGGCTTACGGCTATCTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_b21.g1 MSMg01no236_b21.g1 CHROMAT_FILE:
MSMg01no236_b21.g1 PHD_FILE: MSMg01no236_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:53:36 2005
         (166 letters)



>mm_chr8_66288633_66289198
          Length = 566

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaatatcataaaatttaattaccttccatttcttatgattgtatcttttcaatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 agtgaatatcataaaatttaattaccttccatttcttatgattgtatcttttcaatagaa 307

                                                                       
Query: 61  ttcctttgatctttaatatgtaaccaccaatactgtgattctcagtattgacattgccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttcctttgatctttaatatgtaaccaccaatactgtgattctcagtattgacattgccct 247

                                                         
Query: 121 tttatggagttttttgttttttgtttttttggctttttttttctgg 166
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 246 tttatggagttttttgttttttgtttttttggttttttttttctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)