BAC Information

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BAC

Clone NameMSMg01-236K12
Chromosome8 (Build37)
Map Location 100,265,481 - 100,378,730
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC333331, LOC546090, LOC636859
Downstream geneEG384885, LOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-236K12.T7 (MSMg01no236_k12.b1)MSMg01-236K12.TJ (MSMg01no236_k12.g1)
ACCAG401847AG401848
length732728
length of high quality
(start - end)
628 (46 - 673)653 (76 - 728)
definitionCHROMAT_FILE: MSMg01no236_k12.b1 PHD_FILE: MSMg01no236_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:16 2005CHROMAT_FILE: MSMg01no236_k12.g1 PHD_FILE: MSMg01no236_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,378,125 - 100,378,730)(100,265,481 - 100,266,131)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCATTTCGGAGATGCATGCTCAATTTCCTCTAATCCAACTCAGG
CCTGCCAATGGTATCTAGAGACTACCAGATACCACAAACAAAGGTCTCAG
CCCTCAGCTTGAGCCTCTCCCCCAGTTCCTGACACATGTGCACACACACA
TACTTTTGAAGTTAAATGTAAGTGCCAGAATGTTTTATCTGTGTGATGTA
ACTCAGAGTCCTTTAAACAACATGATGGGGTACGTTATGCTCCTGAGTAG
CTCACAGAACTTACTGAAACAGTCATGTTTGCATTTGCAGATTTATTACC
AAGGGTCAGGAAAAGAAAATGGATGAAAAAAAAAAAAGCGGATAAAGTGA
GATAACAAAGAGAGTGTTTAGTTTTCCATATGTGGGAAAGGTAAATTAAA
TGTACTCTTTATTAAAAGGTTAAATGAGAATAAGATTCATCTTTAAAGGC
ATTTGTAAAGACACCATCTTGCAAAAATCCCTCCCCAGTTGACAGTTTTC
TAGGATCAAAATACATGTTCAAGGTTACATCCTGCTCTCAGAATCATCCT
TTAATTTTAGGTGTTCCATTTTGAATTAGCCAACAAGGTGAAAGAGTGAG
GCCAAACTCTGACCCCTCCTAGCGAGGAACAGAACCCTTTGCCTTAAGAA
TACATATTTAGTTTGCAGAAGGGCACCTGATC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTGACTGAACAGGACTAAGTCAA
TTTACTGAACTGTCTCGCAGTTTGAAATCACTTTCAAACATGGCTACTCC
TCCTACAAAAGTAAGCTTACCTACATGCTCTGTACTTTGTACATATGTAC
TAAAGGTGTGTGTGTGTGTGTGTGTTGCAGCCAGATCACACAGACCTAAG
ACGTCTTTGGATGTTATTCATTTCTGGAGCAGCCAGGTTGATGGATTAAT
ATTCCTCTACAGTAGAATTATTTGAGAAGTATGGCATTAACTCTTTGAAA
GTTTGGTAGAATGCTTTTCTAATAGAAGGGGGAAGGATCTGGTTACTTCC
CATTAGGAATGTATAGCTATTTAATTTTATTAGATAAGAGGTGAGAGATA
ACAATTTAATTAGAATAGGTTAGCAATACAGAAGAAGAAAGGGATTTATC
TCTAAGACAGTAGTGGTAAAATCAGAAGGTTGTCAGCACAAATGGAATCC
TTCTTTCTATTATTTAGAAGTAACCCCTGATCTTTCACTTGTGCAACTCT
CCTGAATTTACAAATGGAGCTACTATCTGAATTGTGTTTGGATTTTTCTT
CCACAATAAACCCATATTTCACTTCTGGACTCAATGACTAAGACAGGTTC
AATTTGTGATAATCAATCTGATAGAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no236_k12.b1 MSMg01no236_k12.b1 CHROMAT_FILE:
MSMg01no236_k12.b1 PHD_FILE: MSMg01no236_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
         (628 letters)



>mm_chr8_100377775_100378803
          Length = 1029

 Score = 1073 bits (555), Expect = 0.0
 Identities = 598/623 (95%), Gaps = 20/623 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgca--tttcggagatgcatgctcaatttcctctaatccaactcaggcctgcca 62
           ||||||||||  |   || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaattctgcaggt---ggggatgcatgctcaatttcctctaatccaactcaggcctgcca 900

                                                                       
Query: 63  atggtatctagagactaccagataccacaaacaaaggtctcagccctcagcttgagcctc 122
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 atggtatctagagactagcagataccacaaacaaaggtctcagccctcagcttgagcctc 840

                                                                       
Query: 123 tcccccagttcctgacacatgtgcacacacacatacttttgaagttaaatgtaagtgcca 182
           ||||||||||||||              ||||||||||||||||||||||||||||||||
Sbjct: 839 tcccccagttcctg--------------acacatacttttgaagttaaatgtaagtgcca 794

                                                                       
Query: 183 gaatgttttatctgtgtgatgtaactcagagtcctttaaacaacatgatggggtacgtta 242
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gattgttttatctgtgtgatgtaactcagagtcctttaaacaacatgatggggtacgtta 734

                                                                       
Query: 243 tgctcctgagtagctcacagaacttactgaaacagtcatgtttgcatttgcagatttatt 302
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgttcctgagtagctcacagaacttactgaaacagtcatgtttgcatttgcagatttatt 674

                                                                       
Query: 303 accaagggtcaggaaaagaaaatggatg-aaaaaaaaaaaagcggataaagtgagataac 361
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 673 accaagggtcaggaaaagaaaatggatgaaaaaaaaaaaaagcagataaagtgagataac 614

                                                                       
Query: 362 aaagagagtgtttagttttccatatgtgggaaaggtaaattaaatgtactctttattaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaagagagtgtttagttttccatatgtgggaaaggtaaattaaatgtactctttattaaa 554

                                                                       
Query: 422 aggttaaatgagaataagattcatctttaaaggcatttgtaaagacaccatcttgcaaaa 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aggttaaatgagaataagattcatctttaaaggcatttgtaaagacaccatcttgcaaaa 494

                                                                       
Query: 482 atccctccccagttgacagttttctaggatcaaaatacatgttcaaggttacatcctgct 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atccctccccagttgacagttttctaggatcaaaatacatgttcaaggttacatcctgct 434

                                                                       
Query: 542 ctcagaatcatcctttaattttaggtgttccattttgaattagccaacaaggtgaaagag 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctcagaatcatcctttaattttaggtgttccattttgaattagccaacaaggtgaaagag 374

                                  
Query: 602 tgaggccaaactctgacccctcc 624
           |||||||||||||||||||||||
Sbjct: 373 tgaggccaaactctgacccctcc 351


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space:   629742
Effective search space used:   629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no236_k12.g1 MSMg01no236_k12.g1 CHROMAT_FILE:
MSMg01no236_k12.g1 PHD_FILE: MSMg01no236_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
         (653 letters)



>mm_chr8_100265279_100266331
          Length = 1053

 Score = 1243 bits (643), Expect = 0.0
 Identities = 650/653 (99%), Gaps = 2/653 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgactgaacaggactaagtcaatttactgaactgtctcgcagtttgaaatcactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aactgactgaacaggactaagtcaatttactgaactgtctcgcagtttgaaatcactttc 262

                                                                       
Query: 61  aaacatggctactcctcctacaaaagtaagcttacctacatgctctgtactttgtacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacatggctactcctcctacaaaagtaagcttacctacatgctctgtactttgtacata 322

                                                                       
Query: 121 tgtactaaaggtgtgtgtgtgtgtgtgtgttgcagccagatcacacagacctaagacgtc 180
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 323 tgtactaaaggtgtgtgtgtgtgtgtgt--tgcagccagatcacacagacctaagacgtc 380

                                                                       
Query: 181 tttggatgttattcatttctggagcagccaggttgatggattaatattcctctacagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggatgttattcatttctggagcagccaggttgatggattaatattcctctacagtag 440

                                                                       
Query: 241 aattatttgagaagtatggcattaactctttgaaagtttggtagaatgcttttctaatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattatttgagaagtatggcattaactctttgaaagtttggtagaatgcttttctaatag 500

                                                                       
Query: 301 aagggggaaggatctggttacttcccattaggaatgtatagctatttaattttattagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggggaaggatctggttacttcccattaggaatgtatagctatttaattttattagat 560

                                                                       
Query: 361 aagaggtgagagataacaatttaattagaataggttagcaatacagaagaagaaagggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaggtgagagataacaatttaattagaataggttagcaatacagaagaagaaagggat 620

                                                                       
Query: 421 ttatctctaagacagtagtggtaaaatcagaaggttgtcagcacaaatggaatccttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatctctaagacagtagtggtaaaatcagaaggttgtcagcacaaatggaatccttctt 680

                                                                       
Query: 481 tctattatttagaagtaacccctgatctttcacttgtgcaactctcctgaatttacaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctattatttagaagtaacccctgatctttcacttgtgcaactctcctgaatttacaaat 740

                                                                       
Query: 541 ggagctactatctgaattgtgtttggatttttcttccacaataaacccatatttcacttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagctactatctgaattgtgtttggatttttcttccacaataaacccatatttcacttc 800

                                                                
Query: 601 tggactcaatgactaagacaggttcaatttgtgataatcaatctgatagagta 653
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tggactcaatgactaagtcaggttcaatttgtgataatcaatctgatagagta 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)