Query= MSMg01no236_k12.b1 MSMg01no236_k12.b1 CHROMAT_FILE:
MSMg01no236_k12.b1 PHD_FILE: MSMg01no236_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(628 letters)
>mm_chr8_100377775_100378803
Length = 1029
Score = 1073 bits (555), Expect = 0.0
Identities = 598/623 (95%), Gaps = 20/623 (3%)
Strand = Plus / Minus
Query: 5 gaattctgca--tttcggagatgcatgctcaatttcctctaatccaactcaggcctgcca 62
|||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 gaattctgcaggt---ggggatgcatgctcaatttcctctaatccaactcaggcctgcca 900
Query: 63 atggtatctagagactaccagataccacaaacaaaggtctcagccctcagcttgagcctc 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 atggtatctagagactagcagataccacaaacaaaggtctcagccctcagcttgagcctc 840
Query: 123 tcccccagttcctgacacatgtgcacacacacatacttttgaagttaaatgtaagtgcca 182
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 839 tcccccagttcctg--------------acacatacttttgaagttaaatgtaagtgcca 794
Query: 183 gaatgttttatctgtgtgatgtaactcagagtcctttaaacaacatgatggggtacgtta 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gattgttttatctgtgtgatgtaactcagagtcctttaaacaacatgatggggtacgtta 734
Query: 243 tgctcctgagtagctcacagaacttactgaaacagtcatgtttgcatttgcagatttatt 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgttcctgagtagctcacagaacttactgaaacagtcatgtttgcatttgcagatttatt 674
Query: 303 accaagggtcaggaaaagaaaatggatg-aaaaaaaaaaaagcggataaagtgagataac 361
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 673 accaagggtcaggaaaagaaaatggatgaaaaaaaaaaaaagcagataaagtgagataac 614
Query: 362 aaagagagtgtttagttttccatatgtgggaaaggtaaattaaatgtactctttattaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaagagagtgtttagttttccatatgtgggaaaggtaaattaaatgtactctttattaaa 554
Query: 422 aggttaaatgagaataagattcatctttaaaggcatttgtaaagacaccatcttgcaaaa 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aggttaaatgagaataagattcatctttaaaggcatttgtaaagacaccatcttgcaaaa 494
Query: 482 atccctccccagttgacagttttctaggatcaaaatacatgttcaaggttacatcctgct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atccctccccagttgacagttttctaggatcaaaatacatgttcaaggttacatcctgct 434
Query: 542 ctcagaatcatcctttaattttaggtgttccattttgaattagccaacaaggtgaaagag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctcagaatcatcctttaattttaggtgttccattttgaattagccaacaaggtgaaagag 374
Query: 602 tgaggccaaactctgacccctcc 624
|||||||||||||||||||||||
Sbjct: 373 tgaggccaaactctgacccctcc 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1029
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1019
Effective search space: 629742
Effective search space used: 629742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no236_k12.g1 MSMg01no236_k12.g1 CHROMAT_FILE:
MSMg01no236_k12.g1 PHD_FILE: MSMg01no236_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:16 2005
(653 letters)
>mm_chr8_100265279_100266331
Length = 1053
Score = 1243 bits (643), Expect = 0.0
Identities = 650/653 (99%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 1 aactgactgaacaggactaagtcaatttactgaactgtctcgcagtttgaaatcactttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aactgactgaacaggactaagtcaatttactgaactgtctcgcagtttgaaatcactttc 262
Query: 61 aaacatggctactcctcctacaaaagtaagcttacctacatgctctgtactttgtacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaacatggctactcctcctacaaaagtaagcttacctacatgctctgtactttgtacata 322
Query: 121 tgtactaaaggtgtgtgtgtgtgtgtgtgttgcagccagatcacacagacctaagacgtc 180
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 323 tgtactaaaggtgtgtgtgtgtgtgtgt--tgcagccagatcacacagacctaagacgtc 380
Query: 181 tttggatgttattcatttctggagcagccaggttgatggattaatattcctctacagtag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttggatgttattcatttctggagcagccaggttgatggattaatattcctctacagtag 440
Query: 241 aattatttgagaagtatggcattaactctttgaaagtttggtagaatgcttttctaatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattatttgagaagtatggcattaactctttgaaagtttggtagaatgcttttctaatag 500
Query: 301 aagggggaaggatctggttacttcccattaggaatgtatagctatttaattttattagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggggaaggatctggttacttcccattaggaatgtatagctatttaattttattagat 560
Query: 361 aagaggtgagagataacaatttaattagaataggttagcaatacagaagaagaaagggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaggtgagagataacaatttaattagaataggttagcaatacagaagaagaaagggat 620
Query: 421 ttatctctaagacagtagtggtaaaatcagaaggttgtcagcacaaatggaatccttctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatctctaagacagtagtggtaaaatcagaaggttgtcagcacaaatggaatccttctt 680
Query: 481 tctattatttagaagtaacccctgatctttcacttgtgcaactctcctgaatttacaaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctattatttagaagtaacccctgatctttcacttgtgcaactctcctgaatttacaaat 740
Query: 541 ggagctactatctgaattgtgtttggatttttcttccacaataaacccatatttcacttc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggagctactatctgaattgtgtttggatttttcttccacaataaacccatatttcacttc 800
Query: 601 tggactcaatgactaagacaggttcaatttgtgataatcaatctgatagagta 653
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tggactcaatgactaagtcaggttcaatttgtgataatcaatctgatagagta 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|