BAC Information

Click to search

BAC

Clone NameMSMg01-237A12
Chromosome8 (Build37)
Map Location 72,229,830 - 72,230,073
singlet/doubletsinglet
Overlap gene1200003I07Rik
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741
Downstream geneD330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237A12.T7 (MSMg01no237_a12.b1)MSMg01-237A12.TJ (MSMg01no237_a12.g1)
ACCAG402109
length739799
length of high quality
(start - end)
---244 (125 - 368)
definitionCHROMAT_FILE: MSMg01no237_a12.b1 PHD_FILE: MSMg01no237_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:44 2005CHROMAT_FILE: MSMg01no237_a12.g1 PHD_FILE: MSMg01no237_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:54:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCCCCCTCCCCACNCCCCCNCAATTTTTTATCCTATTTTTCTNTTTTATC
TATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGGCAAAGTTTATGTTTGTTA
CCAATGTTGTAAGTGTGGATCCCCACATTTCCTTTCAAAGAAGTAAGTTA
ATTCATGTTGGGCAAATGCCCTACGAATGTATAAGATATGGTTAATCTTT
CATTTATCTCTATTTGCCTTAAAATCATGAAAGAACTCATAGTGGTGAAA
AAGCCCCACATGAATATAAACAATGTGGAAAGCCTTCAGGTGTCACATGT
CCTTTCACTAGCATGGATGATATGTCATGTTGGAGAGAAAATGGGAATGT
AAGGTGTGTTTTTTATTTCCCATACCATCGCCTGTCTAGATTCCGAGAAT
GAATTCCAACTGGACAAATTTCAAAAAGAAAACAGTTGTGAAGCCTTCAT
GGTCACAGTTGTTTAAGATGCTCATAGTGTTGGAAGGTGTCCAGTTCTGT
GAGTGTAAGGAGCGTGTCAATTTAATGGTTACTACTATATGGACCTTTCC
TTTGCAGCGTCTTCCCATGACTTGCCTGTATTCTTGTAAATACTCCAAAT
TAAACTCCACGTTTTCCTCTAATTCTATTTGATCATAAACATTCATTGTA
CCCTGTCTATTGATGTACCGAACTGGCCTATAAAAGATCTTTCATAAATG
TCTTCAATGTTTTTAAAATTTTTTTTTAAACCCCGGTTGTACATATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_a12.g1 MSMg01no237_a12.g1 CHROMAT_FILE:
MSMg01no237_a12.g1 PHD_FILE: MSMg01no237_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:54:44 2005
         (244 letters)



>mm_chr8_72229630_72230273
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctgggcaaagtttatgtttgttaccaatgttgtaagtgtggatccccacatttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 444 ttgctgggcaaagtttatgtttgttaccaatgttgtaagtgtggattgtcacatttcctt 385

                                                                       
Query: 61  tcaaagaagtaagttaattcatgttgggcaaatgccctacgaatgtataagatatggtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaagaagtaagttaattcatgttgggcaaatgccctacgaatgtataagatatggtta 325

                                                                       
Query: 121 atctttcatttatctctatttgccttaaaatcatgaaagaactcatagtggtgaaaaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atctttcatttatctctatttgccttaaaatcatgaaagaactcatagtggtgaaaaagc 265

                                                                       
Query: 181 cccacatgaatataaacaatgtggaaagccttcaggtgtcacatgtcctttcactagcat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 cccacatgaatataaacaatgtggaaagccttcaggtgtcacaggtcctttcactagcat 205

               
Query: 241 ggat 244
           ||||
Sbjct: 204 ggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)