BAC Information

Click to search

BAC

Clone NameMSMg01-237F01
Chromosome8 (Build37)
Map Location 67,483,546 - 67,483,891
singlet/doubletsinglet
Overlap gene3110005G23Rik
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647
Downstream geneTrim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237F01.T7 (MSMg01no237_f01.b1)MSMg01-237F01.TJ (MSMg01no237_f01.g1)
ACCAG402296AG402297
length699735
length of high quality
(start - end)
103 (96 - 198)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no237_f01.b1 PHD_FILE: MSMg01no237_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:07 2005CHROMAT_FILE: MSMg01no237_f01.g1 PHD_FILE: MSMg01no237_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATTTTCGGAGNGACGGAATCTTTGTTTTCATGACCAATCTTTTAT
CCACCTACTTTCTGAAGAACCACCTCTCAGTTATGCCCCACCTACATGCC
CAGCTAATAGACTTTATTTTAAATCATTTAATTGGCTCTCTAGACGACTG
ATGTCTGTATATGTGCGACAGAAGGACATAAAGGAATATGAAGGAAGATC
CCATATTTTAAGACCCTGTCTCCCCACTCCCTGAAATTAAACCATTAAAC
TCCAGGACAAACCTTTAAGTAAATTCNAGAATGAAAGCATCCAGGAGNAT
CATTATTCTTGCCCCCCCCCTATACATATATTTATTTCTGGGAGATAGAG
ACTACAGAGACACAGAGAGAGAGAGAGAGAGAGAGATGGAGACAGATACA
GAGAAACATACACACCCAGATCAGAGAGAGAGAGAGAGATATTTAGGCCT
GGGGGCACACCTGCCCCGATGTGCATATTGAACTCCACCTCTTTCCTTTT
CTTGACACAGGTTTTCTTTGTATACACCCTGACTGTTCCCGTAACCCTCC
TTGTTCCAACCACCCTGCCCCCCTTATCTCATACACCTTTCCCGCCCCTC
TGTTTTTTTTTTACGCCTCGCCATCACTAGGCTAAGCGCACCCCCCCCAC
CCCGGTCTTTAACTTCCATCTTTTTTCACCCAGGATCACTCTTTCTTAC
CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAGTGCCAGCCTATAAGACAC
GGTGAGATCCTATTTCAAAACAACCATGGAGACTATGTAAGAAGAGCTTC
AAGAGGTTCGTGGGACATAGCTAGGTAGCAATGTGCTTGTTTAGCATGCA
CAAGGCTGTAGGTTCAAGCCCTCTCTCTTCACATCAAAGGAAAAATTCAA
GATTGGGGCTACAATACATCTCACTCTCAAAAAGAGAATATATTTTTATT
ATAAACTCAATAAAATCAAGTTCCACATGTCCTTTGTGGGTCATTTTTGG
CACTCAAGCCACAGAGCAGATAAGAGATGCAGTACTTGGGCTAGAGAGAT
GGCTCAGCCATTAAAGACTAGGCTTACAACCAAAAATATAAGAGAGACGT
GGTACTCACCAGAAGAGTGGATGGTGAGGGCCAGTGTTTTGAGATGCCTC
GTATAGCGGTAGATCTGGGAATAGCCTCGGCTCCTGACTTTCCTGTGGTG
ATACTGGACGTAGCCGTCAAAAAGCAAATGCAGAATCCACAGGATAAGTT
TCCCAAGGATTATGGCTGTCTGAACCTTCCACCGGCTGGTGTAGTTTTCT
GGGCACTTGTCTTCAGTTGGATTAGGATACCAACCCGGTACACCCGTTTA
TAATGTCTAAACCAACATACGCTGATCTGTTGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_f01.g1 MSMg01no237_f01.g1 CHROMAT_FILE:
MSMg01no237_f01.g1 PHD_FILE: MSMg01no237_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:07 2005
         (346 letters)



>mm_chr8_67483201_67483946
          Length = 746

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggagtgccagcctataagacacggtgagatcctatttcaaaacaaccatggagactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 taggagtgccagcctataagacacggtgagatcctatttcaaaacaaccatggagactat 632

                                                                       
Query: 61  gtaagaagagcttcaagaggttcgtgggacatagctaggtagcaatgtgcttgtttagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtaagaagagcttcaagaggttcgtgggacatagctaggtagcaatgtgcttgtttagca 572

                                                                       
Query: 121 tgcacaaggctgtaggttcaagccctctctcttcacatcaaaggaaaaattcaagattgg 180
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 571 tgcacaaggctgtaggttcaagccctctctcgtcacatcaaaagaaaaattcaagattgg 512

                                                                       
Query: 181 ggctacaatacatctcactctcaaaaagagaatatatttttattataaactcaataaaat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggctacaatacatctcattctcaaaaagagaatatatttttattataaactcaataaaat 452

                                                                       
Query: 241 caagttccacatgtcctttgtgggtcatttttggcactcaagccacagagcagataagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caagttccacatgtcctttgtgggtcatttttggcactcaagccacagagcagataagag 392

                                                         
Query: 301 atgcagtacttgggctagagagatggctcagccattaaagactagg 346
           |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atgctgtacttgggctagagagatggctcagccattaaagactagg 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)