Query= MSMg01no237_h03.b1 MSMg01no237_h03.b1 CHROMAT_FILE:
MSMg01no237_h03.b1 PHD_FILE: MSMg01no237_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(242 letters)
>mm_chr8_55591695_55592335
Length = 641
Score = 429 bits (222), Expect = e-125
Identities = 237/242 (97%), Gaps = 1/242 (0%)
Strand = Plus / Plus
Query: 1 ccactaattcatgaatctgtcacacctgtgggtaacctaccaaggtccaaactaaaagtt 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ccactaattcatgaatctgtcacacctgtgggtaacctaccaaggttaaaactaaaagtt 260
Query: 61 ttatgtcaatggtgaatacataaatgagaaataaacagaagtttcttaattcaaaagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgtcaatggtgaatacataaatgagaaataaacagaagtttcttaattcaaaagaaa 320
Query: 121 atatggaggaaaaataagcacagaaacacattatataccaaacccagagggagagagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatggaggaaaaataagcacagaaacacattatataccaaacccagagggagagagaga 380
Query: 181 aaatatgtccacagattttgataattagcaattaaaaaaagaacaatttatctgatcata 240
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct: 381 aaatatgtccacagattttgataattagcaattaaaaaa-gaataatttatctgatcgta 439
Query: 241 ct 242
||
Sbjct: 440 ct 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space: 147256
Effective search space used: 147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no237_h03.g1 MSMg01no237_h03.g1 CHROMAT_FILE:
MSMg01no237_h03.g1 PHD_FILE: MSMg01no237_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:16 2005
(423 letters)
>mm_chr8_55749711_55750540
Length = 830
Score = 750 bits (388), Expect = 0.0
Identities = 418/430 (97%), Gaps = 7/430 (1%)
Strand = Plus / Minus
Query: 1 tctgcagtggttctgatgatgggtatgtatgtctgaattctaattttcctgtcctataaa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 630 tctgcagtggttctgatgatgggtatgtatgtttgaattctaattttcctgtcctataaa 571
Query: 61 tcgtaaacttacagtttcccagaaatgcatgtgtagtattaacaacttattt-atggagc 119
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 570 tcgtaaacttacagtttcccagaaatgcatgtgtagtattaacaaattatttaatggagc 511
Query: 120 gatagaaaataagtgcttagtgcatagataactaataataagacaaaataagtattagaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gatagaaaataagtgcttagtgcatagataactaataataagacaaaataagtattagaa 451
Query: 180 cctagtcaaatcctatctggtttatactactgctgtattcctga---tttttttttgttt 236
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 cctagtcaaatcctatctggtttatactactgctgtattcctgattttttttttttgttt 391
Query: 237 attttgctcaaggtagatgcttgtttcttccttattatcaagaatgttaatagaaaat-g 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 attttgctcaaggtagatgcttgtttcttccttattatcaagaatgttaatagaaaatag 331
Query: 296 --attttaaagtaaaagaagatctgaaacaaatctttataaaacaagataatttataact 353
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaatttaaagtaaaagaagatctgaaacaaatctttataaaacaagataatttataact 271
Query: 354 ttttggtgtttgatgtagaaatcatttttactcttgtgaaaactggcatgcattgactat 413
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 270 ttttggtgtttgatgtagaaaacatttttactcatgtgaaaactggcatgcattgactat 211
Query: 414 aaatcttggc 423
||||||||||
Sbjct: 210 aaatcttggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 830
Length adjustment: 9
Effective length of query: 414
Effective length of database: 821
Effective search space: 339894
Effective search space used: 339894
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
