BAC Information

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BAC

Clone NameMSMg01-237L02
Chromosome8 (Build37)
Map Location 41,678,034 - 41,678,333
singlet/doubletsinglet
Overlap geneMtmr7
Upstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a
Downstream geneLOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237L02.T7 (MSMg01no237_l02.b1)MSMg01-237L02.TJ (MSMg01no237_l02.g1)
ACCAG402568AG402569
length705757
length of high quality
(start - end)
300 (55 - 354)194 (130 - 323)
definitionCHROMAT_FILE: MSMg01no237_l02.b1 PHD_FILE: MSMg01no237_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:35 2005CHROMAT_FILE: MSMg01no237_l02.g1 PHD_FILE: MSMg01no237_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGG
AATCATATTAGTTTTCAGATAAAGTTTTGTATTCCTGAATAAGGGGCCAT
TGAGCCTTGTGATAGGCTTTGCCTAGGGTCTGTAGGTTGCTTTGGGCAGG
GTACTTACTACTATTGGGTCTTCTACTCTAGGAATTCAAGCATCATTCCA
TTTGTATCTTCTGGAGAGATGTTTGTAGTGTGCAGGGTAGGACTTAGTTT
TCACTCAGGAGCATTGCCTACTTCAAAAGGAGGATAAATTTCATTCTTTA
GTTCTGTCTGTATAAGGCTGTTTATCAGAAGTCAAGTTAAATGACATTGT
AGGCCTGGGGGTATGATCATCATTGTCGTCATCATATTATCAACAGCGTT
AATGGATTTTTACAGGTGCTCCAGCTTCTTAGAAATTCTAGTGGAAGATG
TTCAGGGTGCCATATACTTTAGCTTTGACTGATGGGCAATGCGCTGAAGA
AGCAGAATTCCTTTAAGAGAATTGTATTCAAGACAGGAGGGTGTGCCAGT
CAGCTTGGACACACCTTCGATGTGGTTGACTGGGCACAGGTAGAGCAGCT
TTGGCCTGTACAGTGGCTGAGCCATGAAGGTCACAGTCTCCTCTGGAGAG
TGTTAACTCTGGTGTTGCACATGGTAACGACTGTCCTTCACGTATTCAGA
GAAGG
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCACTACAAATTTATCGAAAAGGAGAGAATAGAATAATGAAAGATCC
TTGCAATCACTCATTCTTGTTTAAGTCTTTTTGAGTTTTGTTTGTTTGTT
TGTTTTTTTCGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGGAAC
TCACTCTGTAGACCATGCTGGCCTCGAACTTTTGAGAGTGTTTAGGGAGA
GCAGACATCCGCACAATTCATTGTGGGATCCAGGCGGGTGCGGTTCTGTG
GATGAGGGCAATGATTGCTTCCTCTTCTCTCACGCTTGAGCGTTGGATCT
GACAATCTACTTCTTTTTTTTTACAACATGACCGATGCTCTTCCCTTTTG
TCTTTAAGCATGTTTTGGACCCTTTGTCATTACAGAAAATGCCAGATTGG
AGTTCATAGCTTCTGCTAGAAGTTTTTTTGGGCACAAAATGGGGGATTAA
AATTATCACTTTTTTTTCAAAATTTTTGAAAGCACTTTGGTTCTTTTTGN
GGTTTTCCGGGTCAGGGAGTTAAAAGGTGTTTTTTTTTCNCTTCCAAATG
TTTATTTGTGGTGGGGGATCTTGAAAATTCATTCCTGAAGGCACACGCCC
TGTCATTCTTCTTTCTTTAACATACCCNTNNTATCCACTCCTTTCTTTTG
ATATTACTTTTTTATTTTTCTTTCTATTTTTCTTCATGAAATAAATTTCT
TGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_l02.b1 MSMg01no237_l02.b1 CHROMAT_FILE:
MSMg01no237_l02.b1 PHD_FILE: MSMg01no237_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:35 2005
         (300 letters)



>mm_chr8_41677676_41678375
          Length = 700

 Score =  572 bits (296), Expect = e-168
 Identities = 299/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattagttttcagataaagttttgtattcctgaataaggggccattgagccttgtgata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 658 atattagttttcagataaagttttgtattcctgaataaggggccattgaggcttgtgata 599

                                                                       
Query: 61  ggctttgcctagggtctgtaggttgctttgggcagggtacttactactattgggtcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ggctttgcctagggtctgtaggttgctttgggcagggtacttactactattgggtcttct 539

                                                                       
Query: 121 actctaggaattcaagcatcattccatttgtatcttctggagagatgtttgtagtgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 actctaggaattcaagcatcattccatttgtatcttctggagagatgtttgtagtgtgca 479

                                                                       
Query: 181 gggtaggacttagttttcactcaggagcattgcctacttcaaaaggaggataaatttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gggtaggacttagttttcactcaggagcattgcctacttcaaaaggaggataaatttcat 419

                                                                       
Query: 241 tctttagttctgtctgtataaggctgtttatcagaagtcaagttaaatgacattgtaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tctttagttctgtctgtataaggctgtttatcagaagtcaagttaaatgacattgtaggc 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)