BAC Information

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BAC

Clone NameMSMg01-260H21
Chromosome8 (Build37)
Map Location 97,905,233 - 97,905,615
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15
Downstream geneGtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260H21.T7 (MSMg01no260_h21.b1)MSMg01-260H21.TJ (MSMg01no260_h21.g1)
ACCAG403143AG403144
length735753
length of high quality
(start - end)		488 (62 - 549)459 (80 - 538)
definitionCHROMAT_FILE: MSMg01no260_h21.b1 PHD_FILE: MSMg01no260_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:36 2005CHROMAT_FILE: MSMg01no260_h21.g1 PHD_FILE: MSMg01no260_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGCCCTCCACCCATGCTAACACTTAGTATTGTCATCATTT
GTACTTTAGCCACTGGTAGATCAATTGCTATGGGCTATGGTATTGTGTTG
TTAATTTTTCTTTGTCTGACAGCTAATCTTTGAAGTTGGATTGCGATTTT
ATCCTCTTTCATTTGTTTGTTTTGTTTTGGAGACAGGATTTCTTTGTGTA
GCTCTGGCTGTCCTAGAACTAGCACTGTAGATTAGACTGGCCTTGAACTC
ACAGAGACCTTCCTGCCTCTGCTTCGGGACTTCTAGGGCTAATGGTTTTT
GTTAGTACCCCCTGGCTGTGTTTTCATCTTTTCATTGCTTGCTGAGATGT
TGTTTCTAAGTAAGGCACCGGCCAAGTCACCTATGAATGTTTTCCTGGGG
GTCTCTTTGTAAAAAGTGTTTTGCAGCATTCCATCTGCAGATATAAGATT
TCTCTTAGCTCAGCATTTTCTCTGGGAGCTTTGCTGGTCCTTGTTGCAGG
TACCCATGGTGAGAAGGAGTGGCCATCACTAGGTATTTTCTTACTTTGAA
GAATTGCTTGGTGTCTGCTTGATATATCACATCCCAGGTCAAAAAAGCCT
AAATCTGAATTTAATATTATTACCTCACCCCCACCCCTAGGAGTCCCTTC
TGGTTGACCGTTACCACATTCTTATTTACATATTG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACAGAATGAAATAAAGTT
TTTACTGGAATAAGATGGCCCATTGTCTGTCTTAATAAGTTTAGGCAATC
CCATGGCATTAAATGCTTGTAGGCAATGATCAATTACGTTTTTTGAAGCT
TCTCCTGTATGCAGAGAAGCAAAAAGAAATCCTGAACAAGTATCAATGCA
AACATGTATATATTTTAGTTTTTCAAATTTTGCATAATGGGTTATATCCA
TTTGCCAAATATGATTAGGCATAAGGCCTCTAGGATTAACTCCTAGATGC
GGCACTGAAGATAAAGTAATACATTTAGGACATTGTTTTACGATCATTCT
CGCTTGCTCCTTTGTGATCTTATGTCGGAGCCTTAGGGTATGGCTAGAAA
GATGAAACCTTTCGTGATCACGTTGGGCCAAAGCAACCCGATCTGAAACT
AAGGCTTCTCCTATTAGAGCTCTGTCAATGCGATCATTACCCTCTGCNAG
AGGTCCAGGAAGACCAGAGTGAGACCGTATGTGCCCAATATNTATCGGAT
TTTTTCGGGCGAAAATGATGTTTTGCAATTCTGAAAATAAAGAATCCTGA
CGGCGGCATTGAAGTTATAACGTACCTCATGGTTTCTAGTAAACGGCNAC
TGACTGAACAAATNTATTANTCGGTCCAGGAAAAAAATTTAAGACTCCCC
ATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_h21.b1 MSMg01no260_h21.b1 CHROMAT_FILE:
MSMg01no260_h21.b1 PHD_FILE: MSMg01no260_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:36 2005
         (488 letters)



>mm_chr8_97904727_97905615
          Length = 889

 Score =  663 bits (343), Expect = 0.0
 Identities = 373/383 (97%), Gaps = 1/383 (0%)
 Strand = Plus / Minus

                                                                       
Query: 107 gacagctaatctttgaagttggattgcgattttatcctctttcatttgtttgttttgttt 166
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 889 gacagctaatctttgaagttggattgcgattttatcctctttcgtttgtttgttttgttt 830

                                                                       
Query: 167 tggagacaggatttctttgtgtagctctggctgtcctagaactagcactgtagattagac 226
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 829 tggagacaggatttctttgtgtagctctggctgtcctagaactagctctgtagataagac 770

                                                                       
Query: 227 tggccttgaactcacagagaccttcctgcctctgcttcgggacttctagggctaatggtt 286
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 769 tggccttgaactcacagagaccttcctgcctctgcttcgggagttctagggctaatggtt 710

                                                                       
Query: 287 tttgttagtaccccctggctgtgttttcatcttttcattgcttgctgagatgttgtttct 346
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tttgttactaccccctggctgtgttttcatcttttcattgcttgctgagatgttgtttct 650

                                                                       
Query: 347 aagtaaggcaccggccaagtcacctatgaatgttttcct-gggggtctctttgtaaaaag 405
           |||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 649 aagtaaggtaatggccaagtcacctatgaatgttttcctggggggtctctttgtaaaaag 590

                                                                       
Query: 406 tgttttgcagcattccatctgcagatataagatttctcttagctcagcattttctctggg 465
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 589 tgttttgcagcattccatctgcagatataagatttctcttagatcagcattttctctggg 530

                                  
Query: 466 agctttgctggtccttgttgcag 488
           |||||||||||||||||||||||
Sbjct: 529 agctttgctggtccttgttgcag 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 889
Length adjustment: 10
Effective length of query: 478
Effective length of database: 879
Effective search space:   420162
Effective search space used:   420162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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