Query= MSMg01no260_p12.b1 MSMg01no260_p12.b1 CHROMAT_FILE:
MSMg01no260_p12.b1 PHD_FILE: MSMg01no260_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:14 2005
(643 letters)
>mm_chr8_47711290_47712332
Length = 1043
Score = 866 bits (448), Expect = 0.0
Identities = 489/514 (95%), Gaps = 18/514 (3%)
Strand = Plus / Minus
Query: 8 gaattccttatctttgccataaatgccaatacatggttaagtaaaaatagataatcgaaa 67
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattccttatcagtgacataaatgccaatacatggttaagtaaaaatagataatcgaaa 455
Query: 68 tctagcatgtcctcttttaacatattactatatttattaaccgtggctgtctgagtggta 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctagcatgtcctcttttaacatattactatatttattaaccgtggctgtctgagtggta 395
Query: 128 ggattgctgacaagttatttactttgtaacaaagttatttactttgtaacattcttctct 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggattgctgacaagttatttactttgtaacaaagttatttactttgtaacattcttctct 335
Query: 188 atcttctagtttttctacaatgtttcaatgttagacaatagtatcaaatgttattttata 247
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atctcctagtttttctacaatgtttcaatgttagacaatagtatcaaatgttattttata 275
Query: 248 aaatactggcagccatagcaggccatgccaccaggattgtgctagacaaatccccaggcg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaatactggcagccatagcaggccatgccaccaggattgtgctagacaaatccccaggcg 215
Query: 308 tatttcaagagagagagaga------------------gagagagagagagagagaatga 349
|||||||||||||||||||| |||||||||||||||||||||
Sbjct: 214 tatttcaagagagagagagaaaaagagagagagagagagagagagagagagagagaatgg 155
Query: 350 catggggcactctggggacaagactggaggactgctgtcagtttgagattagtctgattt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 catggggcactctggggacaagactggaggactgctgtcagtttgagattagtctgattt 95
Query: 410 acctagcaagttccaggccagctctgcaatctcataaaaccaaagagtgaaaaaataagg 469
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 94 acctagcaagttccaggccagctccgcaatctcataaaaccaaagagtgaaaaaataaag 35
Query: 470 gtaactcttctattgagacagcagccactcctct 503
||||||||||||||||||||||||||||||||||
Sbjct: 34 gtaactcttctattgagacagcagccactcctct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_p12.g1 MSMg01no260_p12.g1 CHROMAT_FILE:
MSMg01no260_p12.g1 PHD_FILE: MSMg01no260_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:14 2005
(638 letters)
>mm_chr8_47537022_47538059
Length = 1038
Score = 1164 bits (602), Expect = 0.0
Identities = 629/638 (98%)
Strand = Plus / Plus
Query: 1 tcatatttgatcttttaagcatttattgagaaggtatccccctccccgtgggtttcgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatatttgatcttttaagcatttattgagaaggtatccccctccccgtgggtttcgaac 260
Query: 61 acacaacacaactttatacacatcagtaacagtactcctatcagacagggtgagaatcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaacacaactttatacacatcagtaacagtactcctatcagacagggtgagaatcgg 320
Query: 121 gacagtgctgagtgtggagaagatgtggatcacgcccaacacatatcccccagaattcct 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagcgctgagtgtggagaagatgtggatcacgcccaacacatatcccccagaattcct 380
Query: 181 gttggcatgatttgataaacactggtattttctctctgttcatgcaatgaagctgtccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttggcatgatttgataaacactggtattttctctctgttcatgcaatgaagctgtccat 440
Query: 241 gagatccaccactgtcacagctcagtaaatgcctctaattatctaatactcagacatgtg 300
||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 441 gagatccaccactatcacagctcagtaaattcctctaattttctaatactcagacatgtg 500
Query: 301 gaactcataatcatcttttgagctataggagacaaatcaatacacgtgttactcgagtga 360
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 501 gaactcataatcatcttttgagctgtaggagacaaatcaatagacgtgttactcgagtga 560
Query: 361 cagggtgccaggggcatctggcttggtagaaacatcctcctgcagtgtgcccatgtctga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 cagggtgccaggggcatctggcttggtagaaacatcctcctgcagtgtgcccatgtccga 620
Query: 421 tggacaaaagcctacatattttcaataataaaaattagcaatccccttaaagagagtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggacaaaagcctacatattttcaataataaaaattagcaatccccttaaagagagtgtg 680
Query: 481 tgaagtgacggagaagcgatatttctttgctttaaagtaaaatataggataaaacaaaag 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaagtgacggagaagcaatatttctttgctttaaagtaaaatataggataaaacaaaag 740
Query: 541 ccatcatatcgaagctggacaagacaagcctacagaaaaatcagagccctgagagaaggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccatcatatcgaagctggacaagacaagcctacagaaaaatcagagccctgagagaaggc 800
Query: 601 actcatttacatactcagaagtcccataaaagcatgaa 638
||||||||||||||||||||||||||||||| ||||||
Sbjct: 801 actcatttacatactcagaagtcccataaaaccatgaa 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
