Query= MSMg01no261_a04.b1 MSMg01no261_a04.b1 CHROMAT_FILE:
MSMg01no261_a04.b1 PHD_FILE: MSMg01no261_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
(457 letters)
>mm_chr8_34400454_34401310
Length = 857
Score = 845 bits (437), Expect = 0.0
Identities = 449/453 (99%)
Strand = Plus / Plus
Query: 5 ggaattctaacagctcagcccagctagcagtcaataaccaatggaattctaacagctcag 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctaacagctcagtccagctagcagtcaataaccaatggaattctaacagctcag 264
Query: 65 tccagctagcagtcaataaccaatggaattctaacagctcagtccagcgagcagtcaata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccagctagcagtcaataaccaatggaattctaacagctcagtccagcgagcagtcaata 324
Query: 125 accaatggaattctaacagctcagtccagcgagcaatcaataaccaatggaattctaaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accaatggaattctaacagctcagtccagcgagcaatcaataaccaatggaattctaaca 384
Query: 185 gctcagtccagcgagcagtcaataaccaatggaattctaacagctcagtccagcgagcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctcagtccagcgagcagtcaataaccaatggaattctaacagctcagtccagcgagcag 444
Query: 245 tcaataaccaatggaattctaacagctcagtccagctagcagtcaataaccaatggaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaataaccaatggaattctaacagctcagtccagctagcagtcaataaccaatggaatt 504
Query: 305 ctaagcttcaccggattattctttcatttgatgttaactaatctattaaccagattttca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaagcttcaccggattattctttcatttgatgttaactaatctattaaccagattttca 564
Query: 365 cactgtccctacacacttttagatataaatgaaaactattctaccaaataagttattcat 424
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactgtccctataaacttttagatataaatgaaaactattctaccaaataagttattcat 624
Query: 425 catttcattttttataaagccaccttaaaatgg 457
|||||||||||||| ||||||||||||||||||
Sbjct: 625 catttcattttttaaaaagccaccttaaaatgg 657
Score = 286 bits (148), Expect = 2e-81
Identities = 163/168 (97%)
Strand = Plus / Plus
Query: 141 cagctcagtccagcgagcaatcaataaccaatggaattctaacagctcagtccagcgagc 200
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct: 173 cagctcagtccagcgagcagtcaataagcaatggaattctaacagctcagtccagctagc 232
Query: 201 agtcaataaccaatggaattctaacagctcagtccagcgagcagtcaataaccaatggaa 260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 233 agtcaataaccaatggaattctaacagctcagtccagctagcagtcaataaccaatggaa 292
Query: 261 ttctaacagctcagtccagctagcagtcaataaccaatggaattctaa 308
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 293 ttctaacagctcagtccagcgagcagtcaataaccaatggaattctaa 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 101
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 7
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no261_a04.g1 MSMg01no261_a04.g1 CHROMAT_FILE:
MSMg01no261_a04.g1 PHD_FILE: MSMg01no261_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:17 2005
(532 letters)
>mm_chr8_34554807_34555738
Length = 932
Score = 1029 bits (532), Expect = 0.0
Identities = 532/532 (100%)
Strand = Plus / Minus
Query: 1 tttgttcagttctgagaggggattcttttatctactagttcctgcttgtcttcagatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tttgttcagttctgagaggggattcttttatctactagttcctgcttgtcttcagatgag 616
Query: 61 cccagctcctatgacatgcagatctactctgtgctcaatgagaacagctcctgcaggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cccagctcctatgacatgcagatctactctgtgctcaatgagaacagctcctgcaggcac 556
Query: 121 acggagcctccacaaggggcttgctaggaagcttatgctaatgctgacagctcacatcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acggagcctccacaaggggcttgctaggaagcttatgctaatgctgacagctcacatcta 496
Query: 181 gaactacctgtgaacctcagagtgtgggagagggtgagatcaaggccctggtgcatctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaactacctgtgaacctcagagtgtgggagagggtgagatcaaggccctggtgcatctgc 436
Query: 241 tacaatattcaattattcaatgcttactgagtacgtatgatatactggatgctctgtcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tacaatattcaattattcaatgcttactgagtacgtatgatatactggatgctctgtcag 376
Query: 301 atggggcaatttctctgaggtctacgttttggttttaatattctccgcaacccagacttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atggggcaatttctctgaggtctacgttttggttttaatattctccgcaacccagacttg 316
Query: 361 cttcaaacaggttacaatatgaggagaaatgcagagaaacttgtaagctcaaggtggaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttcaaacaggttacaatatgaggagaaatgcagagaaacttgtaagctcaaggtggaaa 256
Query: 421 aacacattgtattgatgtggtaaccagctatatccaaagctgatttgggttcagactctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacacattgtattgatgtggtaaccagctatatccaaagctgatttgggttcagactctc 196
Query: 481 tctctctctctctctctctctctctctctctctctctctctctctctctctc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tctctctctctctctctctctctctctctctctctctctctctctctctctc 144
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 99
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
