Query= MSMg01no261_e19.b1 MSMg01no261_e19.b1 CHROMAT_FILE:
MSMg01no261_e19.b1 PHD_FILE: MSMg01no261_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:39 2005
(709 letters)
>mm_chr8_117419057_117420159
Length = 1103
Score = 1255 bits (649), Expect = 0.0
Identities = 689/705 (97%), Gaps = 6/705 (0%)
Strand = Plus / Minus
Query: 5 ggaattcagtttacttgtccaccatgatgaagaggatggggcagggtaggcagcaaaggc 64
|||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 710 ggaattcagtttacatgcccaccatgatgaagaggatggggcggggtaggcagcaaaggc 651
Query: 65 agagagaagggaggaggaaaaaagtcttagagttcaaggctcccctctgtcaccctgggc 124
||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 650 agagagaag---ggaggacaaaagacttagagttcaaggctcccctctgtcaccctgggc 594
Query: 125 acatgtcaatcatggtctctacttgggcctcagttccttgtttaaaataaaaggcaggaa 184
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 593 acatgtcaatcatggtctctacttgggcctcagttccttgtttacaataaaaggcaggaa 534
Query: 185 aggacccggtgcagagcaacctggccaaaaaaagtatgtgcaaagaatgtggaagacctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aggacccggtgcagagcaacctggccaaaaaaagtatgtgcaaagaatgtggaagacctg 474
Query: 245 gggaaagtcacgtaattacagtgaggtaacctacaacttgcaatgtcatatgtacacatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gggaaagtcacgtaattacagtgaggtaacctacaacttgcaatgtcatatgtacacatt 414
Query: 305 ctgatatggttgcccttacctgtaacatgtgaacgtgtcaatgggaatgcctcatacatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgatatggttgcccttacctgtaacatgtgaacgtgtcaatgggaatgcctcatacatg 354
Query: 365 acaatccaactctttcagttatcaataacatacacacatgtgtgatgtctcaggcatcca 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acaatccaaccctttcagttatcaataacatacacacatgtgtgatgtctcaggcatcca 294
Query: 425 tcctcaccttcgctccccccccccccccaaggaagactgctcagagacagtgtatgaagg 484
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tcctcaccttcgct---cccccccccccaaggaagactgctcagagacagtgtatgaagg 237
Query: 485 actttggagtccagtttcagaaatattgatctgtcaggtgtggtagctcatatctgaaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 actttggagtccagtttcagaaatattgatctgtcaggtgtggtagctcatatctgaaat 177
Query: 545 cccggcacattaagaggctgaggcaggaggattacccccacaagtttaaggtgagcctag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 cccggcacattaagaggctgaggcaggaggattacccccacaagtttaaggtgagcctag 117
Query: 605 ggtggctattgaggccttgtgtcaaacaaaacaaagcaaaacaagaacattgatcgtttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 116 ggtggctattgaggccttgtgtcaaacaaaacaaagcaaaacaagaacattgatcctttt 57
Query: 665 gcaaaaatcaaatagtacaaggaagttccttacttttgacatctg 709
||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 56 gcaaaaatcaaatagtataaggaggttccttacttttgacatctg 12
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1103
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1093
Effective search space: 764007
Effective search space used: 764007
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no261_e19.g1 MSMg01no261_e19.g1 CHROMAT_FILE:
MSMg01no261_e19.g1 PHD_FILE: MSMg01no261_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:39 2005
(655 letters)
>mm_chr8_117283467_117284523
Length = 1057
Score = 1185 bits (613), Expect = 0.0
Identities = 646/658 (98%), Gaps = 4/658 (0%)
Strand = Plus / Plus
Query: 1 ctcttctggccattgctacacagcctccaaaattatttacacctttcacaccgaggtcat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ctcttctggccattgctacacagcctccaaaattatttacacctttcacaaggaggtcat 260
Query: 61 gaaccctgctatttcaacactgggctaatgtcacaccttcagcttgctgaacagagtaga 120
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 261 gaaccctgctatttcaacactgggctaatgtcacaccttcagtttgctgaaccgagtaga 320
Query: 121 aaggagacaggacaccttttgaccttttttttt--gagggggggcacacttggccctcac 178
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 aaggagacaggacaccttttgacctttttttttttgagggggggcacacttggccctcac 380
Query: 179 ttttgcttgattgtcctctttagaattgcaaagcacctagttggatacctagcctctgtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgcttgattgtcctctttagaattgcaaagcacctagttggatacctagcctctgtg 440
Query: 239 ctccaagttctctgacctgcaacaagccagactttaacttggctctctgtgtatggtgac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaagttctctgacctgcaacaagccagactttaacttggctctctgtgtatggtgac 500
Query: 299 tctgcagagtccccaatccccttcccatattagacagttttctgttgtggaaaaacacca 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgcagagtccccaatccccttcccatattagacagttttctgttgtggaaaaacacca 560
Query: 359 tggccttctggtttcacagggttagaccccatgtgacagagcaaaggcactgtggcaggg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggccttctggtttcacagggttagaccccatgtgacagagcaaaggcactgtggcaggg 620
Query: 419 accaggtgagcactcacatattgatccacaagcaggaggcagagagcaacactgggaatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 accaggtgagcactcacatattgatccacaagcaggaggcagagagcaacactgggaatg 680
Query: 479 gcatgagtcttttgaaaacccaaagcctggccccagggacacactttccctagtggggcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatgagtcttttgaaaacccaaagcctggccccagggacacactttccctagtggggcc 740
Query: 539 acacctcctcatccttcccgaanagttct-actgaatggggacagagtttccaaacatat 597
|||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||
Sbjct: 741 acacctcctcatccttcccgaaaagtt-tgactgaatggggaccgagtttccaaacatat 799
Query: 598 gatccgacaggactcatcttagtctaagccacgagattctaccttcccttctccaagc 655
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 800 gatccgacagaactcatcttagtctaagccaggagattctaccttcccttctccaagc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1057
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1047
Effective search space: 675315
Effective search space used: 675315
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
