BAC Information

Click to search

BAC

Clone NameMSMg01-261F09
Chromosome8 (Build37)
Map Location 40,536,240 - 40,694,603
singlet/doubletdoublet
Overlap geneLOC434304, Msr1
Upstream geneTusc3, LOC100038974, LOC632066, EG621335
Downstream geneEG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261F09.T7 (MSMg01no261_f09.b1)MSMg01-261F09.TJ (MSMg01no261_f09.g1)
ACCAG403754AG403755
length717747
length of high quality
(start - end)
527 (51 - 577)436 (72 - 507)
definitionCHROMAT_FILE: MSMg01no261_f09.b1 PHD_FILE: MSMg01no261_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:42 2005CHROMAT_FILE: MSMg01no261_f09.g1 PHD_FILE: MSMg01no261_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,694,081 - 40,694,603)(40,536,240 - 40,536,675)
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGAAGTTTCAACTTCAGCTTTAAAAGGTTTAAGGGCCA
TGATCTGTCCTAACATCTGCATGTAGCACAGCAGAATAATTGAAGATAAT
ACTTTAGAAATCATTGATAATTTTCATACTCAGATTCTTAAACCACTTCT
GATGTAGTTCAGATGGAAAGTTAAAGGGAAATCCAAAACATTAATAATGA
ATTTGACTTTGAATCAAATAGCACTGAAGCCAGTCCTGTATTGATGTACC
TGTAAGAGGAATCTGGTACCTCTTGGAAGAAGAGTTAATAATCAGACAAA
ACCACTCTCATGAAATATAATTGTCACAATGAGCATCTCATGTTGGTACT
GGATAATTATCTCCTGAATACCATCCTTTAAAGTGGAACTTAGGATAAAG
TGGCAAACCACTCACAAAGCTGAACTGTTAACATTTCTACATTTACTTAT
AAGTTTGAGTCACTGACCTTCATATAACACTTGGGCTTTATGCCCATGTA
AATGAGTCTAGACTAGAAGTTTGAGGAACCAGCGAACATTTATGAACAGT
TATCACACTTCCACAAGCCCCTAAACTTTATAGTTCATCTTTAGAATGGT
CTGTTACTAAGAAATAAATAATGATACCTAAAATAATATTATAGTGAGAA
AAATACACGACTTAGGA
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATAGAGCCTGAAGCAAGGTACACAGAGAC
TTCATGGTTCTGCACTAGATGGAGCTACAGCTGAGAGATGAAATAGATAT
ACACTCCCATCCCTAATCCAGAAGCTATCTCCATTAGATAACCACTTGCA
AATGAATATTTAGTCTTCTACAAGGGAGTCTCAAGGTAGGCTGCATTCTC
AGCAGTAGATGACCAGCAGAAAATAAACTCCACAGGAAAACAAATAATTA
ACAAAACAACCTTGATTAATGACTTAAGAACAGAACTAGTTATTGGCAAG
ACTGGGATCCAGATTCAAAGCCTTGGGTTCAAGAGCCCATGTTTTTATAA
TACTGTATTTTCTTCTCTAAAAAAAAATCTTCCTTTGCAAATGGGTGTGA
TAGAATTTTCTTATTGAGCATGTGGAAGCTATGTGTCCAATCTCCAGGCC
CATCAAAAATGCAAATAACAGAAATAGTTTGTATATGAATAGTATACTTT
ACTGTTCACAAAGCTATGTTAAATTAGACATTTATTATTAATAAAAATTT
TAATCACTGCATCCCAGAAAGTTTGTAAAATCATTTTATTTTAGCGATGT
TTTTTTAACTTTGGCCTATAAAGGGTTATATTTTTGGAAAAATGTAACTT
TTTTATCAAATAAACAATTTTTACATTTTTTTTCAGTCTTGGTAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_f09.b1 MSMg01no261_f09.b1 CHROMAT_FILE:
MSMg01no261_f09.b1 PHD_FILE: MSMg01no261_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:42 2005
         (527 letters)



>mm_chr8_40693877_40694803
          Length = 927

 Score =  965 bits (499), Expect = 0.0
 Identities = 517/523 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatggaagtttcaacttcagctttaaaaggtttaagggccatgatctgtcctaac 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattcatggaagcatgaacttcagctttaaaaggtttaagggccatgatctgtcctaac 668

                                                                       
Query: 65  atctgcatgtagcacagcagaataattgaagataatactttagaaatcattgataatttt 124
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atctgcatgtagtagagcagaataattgaagataatactttagaaatcattgataatttt 608

                                                                       
Query: 125 catactcagattcttaaaccacttctgatgtagttcagatggaaagttaaagggaaatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 catactcagattcttaaaccacttctgatgtagttcagatggaaagttaaagggaaatcc 548

                                                                       
Query: 185 aaaacattaataatgaatttgactttgaatcaaatagcactgaagccagtcctgtattga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaaacattaataatgaatttgactttgaatcaaatagcactgaagccagtcctgtattga 488

                                                                       
Query: 245 tgtacctgtaagaggaatctggtacctcttggaagaagagttaataatcagacaaaacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtacctgtaagaggaatctggtacctcttggaagaagagttaataatcagacaaaacca 428

                                                                       
Query: 305 ctctcatgaaatataattgtcacaatgagcatctcatgttggtactggataattatctcc 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctctcatgaaatagaattgtcacaatgagcatctcatgttggtactggataattatctcc 368

                                                                       
Query: 365 tgaataccatcctttaaagtggaacttaggataaagtggcaaaccactcacaaagctgaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgaataccatcctttaaagtggaacttaggataaagtggcaaaccactcacaaagctgaa 308

                                                                       
Query: 425 ctgttaacatttctacatttacttataagtttgagtcactgaccttcatataacacttgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgttaacatttctacatttacttataagtttgagtcactgaccttcatataacacttgg 248

                                                      
Query: 485 gctttatgcccatgtaaatgagtctagactagaagtttgagga 527
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gctttatgcccatgtaaatgagtctagactagaagtttgagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no261_f09.g1 MSMg01no261_f09.g1 CHROMAT_FILE:
MSMg01no261_f09.g1 PHD_FILE: MSMg01no261_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:42 2005
         (436 letters)



>mm_chr8_40536040_40536875
          Length = 836

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagcctgaagcaaggtacacagagacttcatggttctgcactagatggagctacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagcctgaagcaaggtacacagagacttcatggttctgcactagatggagctacagc 260

                                                                       
Query: 61  tgagagatgaaatagatatacactcccatccctaatccagaagctatctccattagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagatgaaatagatatacactcccatccctaatccagaagctatctccattagataa 320

                                                                       
Query: 121 ccacttgcaaatgaatatttagtcttctacaagggagtctcaaggtaggctgcattctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacttgcaaatgaatatttagtcttctacaagggagtctcaaggtaggctgcattctca 380

                                                                       
Query: 181 gcagtagatgaccagcagaaaataaactccacaggaaaacaaataattaacaaaacaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtagatgaccagcagaaaataaactccacaggaaaacaaataattaacaaaacaacc 440

                                                                       
Query: 241 ttgattaatgacttaagaacagaactagttattggcaagactgggatccagattcaaagc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgattaaggacttaagaacagaactagttattggcaagactgggatccagattcaaagc 500

                                                                       
Query: 301 cttgggttcaagagcccatgtttttataatactgtattttcttctctaaaaaaaaatctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgggttcaagagcccatgtttttataatactgtattttcttctctaaaaaaaaatctt 560

                                                                       
Query: 361 cctttgcaaatgggtgtgatagaattttcttattgagcatgtggaagctatgtgtccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctttgcaaatgggtgtgatagaattttcttattgagcatgtggaagctatgtgtccaat 620

                           
Query: 421 ctccaggcccatcaaa 436
           ||||||||||||||||
Sbjct: 621 ctccaggcccatcaaa 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)