BAC Information

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BAC

Clone NameMSMg01-261M03
Chromosome8 (Build37)
Map Location 26,147,401 - 26,147,584
singlet/doubletsinglet
Overlap geneHtra4
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2
Downstream genePlekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261M03.T7 (MSMg01no261_m03.b1)MSMg01-261M03.TJ (MSMg01no261_m03.g1)
ACCAG404050AG404051
length747699
length of high quality
(start - end)
592 (44 - 635)185 (84 - 268)
definitionCHROMAT_FILE: MSMg01no261_m03.b1 PHD_FILE: MSMg01no261_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:13 2005CHROMAT_FILE: MSMg01no261_m03.g1 PHD_FILE: MSMg01no261_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTCAACATAATTAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGTTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCCCTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCACTTCGACAACAAAAGGAGATCAAGGGGAT
ACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTAGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAGTC
AATGGTCTTTCTCTATACAAAGAATAAACATGCTGAGAAAGAAATTAGTG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCGTG
ACTCTAACTAAGAAAGTGAAAGATCTGTATGATAAAAACTTCAAATCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATTGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA
ATCTACAGAATTCAATGCAATCCCCATCAAAATTTCAACTCAATTCTTCA
ACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAC
TTTTTTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAACTGTGAAATCCT
CACATGTGAAGGCTCTGACTCAGCAGCTCTCTCAGGTACTCACATCTGGC
TCGATCTTAATCAGTGCAAGGTCCAGTTTATGGTCGATGTCTTTGATGGT
GGCTTCATACCGGGCCCCGCTCTGGAAGCTCTACCTGGATCTTCTGCTGG
TTGTGAGNGACGTGGGCATTGGTGACAATGAGCCCATCCTCAGACACTAT
GAACCCAGAGCCGCTGGAGGAAGGGATTTCCTGGTTGGTGAGAGGTGATT
TGTTCAACAAACAATTCTTTAAGCGTGAGGCAGAAGGGAAGGGAAAATCA
AGGGAAACCCCGGCCTTTTTGTGTGGGGAATCCGCAGGAAACCCCCCCCG
GGTTTTTCAAACTTACCTTTTCCCGGTCATTCTCCAAGGGGTTTAATCCT
TTGTCTTTATCCCCCCTTTTCTTTGTTTGTTTTTTTTGGGGTCTTGTTTT
TTAAAACCATCTTTTCTTTGGTCCACCCCTTTTTCTCTGTTTCCTTATCA
TCCCACATTTTTTGTTTCCCCCCCCCTTCTTAATTATTTTTCCCCCCCTT
TTTTCTTACCCTTTTTTTCCCCCTATATTTTAATTATACACGCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_m03.g1 MSMg01no261_m03.g1 CHROMAT_FILE:
MSMg01no261_m03.g1 PHD_FILE: MSMg01no261_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:13 2005
         (185 letters)



>mm_chr8_26147201_26147784
          Length = 584

 Score =  329 bits (170), Expect = 7e-95
 Identities = 182/186 (97%), Gaps = 3/186 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaactgtgaaatcctcacatgtgaaggctctgactcagcagctctctcaggtactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaactgtgaaatcctcacatgtgaaggctctgactcagcagctctctcaggtactcac 260

                                                                       
Query: 61  atctggctcgatcttaatcagtgcaaggtccagtttatggtcgatgtctttgatggtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 atctggctcgatcttaatcagtgcaaggtccagtttatggtcgatgtctttgacggtggc 320

                                                                       
Query: 121 ttcataccgggccccgctctggaagctctacctggatcttctgctggttg-tgagngacg 179
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct: 321 ttcataccgggccccgctctgga-gctctacctggatcttctgctggttggtgag-gacg 378

                 
Query: 180 tgggca 185
           ||||||
Sbjct: 379 tgggca 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 584
Length adjustment: 8
Effective length of query: 177
Effective length of database: 576
Effective search space:   101952
Effective search space used:   101952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)