BAC Information

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BAC

Clone NameMSMg01-263A10
Chromosome8 (Build37)
Map Location 128,583,533 - 128,583,820
singlet/doubletsinglet
Overlap genenone
Upstream geneDisc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1
Downstream geneSlc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2, Tomm20, Rbm34, LOC100043368, Gabarapl2-ps8_1688.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263A10.T7 (MSMg01no263_a10.b1)MSMg01-263A10.TJ (MSMg01no263_a10.g1)
ACCAG404961AG404962
length739742
length of high quality
(start - end)
693 (47 - 739)288 (81 - 368)
definitionCHROMAT_FILE: MSMg01no263_a10.b1 PHD_FILE: MSMg01no263_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:49 2005CHROMAT_FILE: MSMg01no263_a10.g1 PHD_FILE: MSMg01no263_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGATGCATACCGAATGGCTGAGAAGCACCTGAGAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACCGGTAAGAAGGACACATTCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAAATGAATTTATGAAATTTCTAGGCAAA
TGGATGGACCTGGAGGGCATCCTTCTTAGTGAGGTAACCCAATCACAAAG
GAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACT
TAGGATACCCAAGATATAAGATACAATTGCTAAACGCATGAAATTCTAGA
AGAACAAAGACCAAAGTGTGGACACTTTGCCCCTTCTTA
NTTTCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAAGTTGACAAGGAAGA
CTCTGTGAGTCAGTGCGTTTTAACAGCAATGGCTTCTAAAGGCTTGCCAC
ACTGTCTGTAAACTGACACAGCTAAGCTCTGCACACTGCACTCTGCTCTC
TGTACTTGGAACATCGGTTGTTTGTAAATCACCATTTAACACGTACTTGG
GTTGTTCTAAGCATTCATATTGCTAACATCTGTGACCTTGAGAATGATCA
TACAGACAAGTGCTCTTGTTGCCTATCTGTCCCAAGTGAGGTGTGAGGGT
TAATACCTTGTTAGTAAGTGGTGGAAACAAACTCCAATCTGAACATTCAG
ATATCACAGCTTACAACACTATGACAGTCTGCCTCCCAAACAATGTAACT
TTGGCCTTCGCAACAATGTACCAGTCCCAGCAGGAACACAGATATTCTAA
AGAGATACATACACCCCTCACTCCACCCCAGGCGCTGGACTGGTAGAGTA
ATGGCCTCCAGGAAATGTGGATTTCCCTAGGGAATCCTGTGCTGGGAAAA
GGTAAAGGTTAAAGCTTGGTGTCAGCGAGAAGGGGAACTTGTCTCCCATA
AAGAGATTTCACCCAGCTCTGACACCTCGTCAGACTGAGGCAGGAACGAA
AGAGTGGTATTATGGGTACATGAGATAGATTAGGAATCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_a10.g1 MSMg01no263_a10.g1 CHROMAT_FILE:
MSMg01no263_a10.g1 PHD_FILE: MSMg01no263_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:49 2005
         (288 letters)



>mm_chr8_128583333_128584020
          Length = 688

 Score =  518 bits (268), Expect = e-151
 Identities = 283/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaagttgacaaggaagactctgtgagtcagtgcgttttaacagcaatggcttctaaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tgtgaagttgacaatgaagactctgtgagtcagtgcgttttaacagcaatggcttgtaaa 260

                                                                       
Query: 61  ggcttgccacactgtctgtaaactgacacagctaagctctgcacactgcactctgctctc 120
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ggcttgccacaccgtctgtaaactgacacagctaagctttgcacactgcactctgctctc 320

                                                                       
Query: 121 tgtacttggaacatcggttgtttgtaaatcaccatttaacacgtacttgggttgttctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacttggaacatcggttgtttgtaaatcaccatttaacacgtacttgggttgttctaa 380

                                                                       
Query: 181 gcattcatattgctaacatctgtgaccttgagaatgatcatacagacaagtgctcttgtt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcgttcatattgctaacatctgtgaccttgagaatgatcatacagacaagtgctcttgtt 440

                                                           
Query: 241 gcctatctgtcccaagtgaggtgtgagggttaataccttgttagtaag 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctatctgtcccaagtgaggtgtgagggttaataccttgttagtaag 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)