BAC Information

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BAC

Clone NameMSMg01-263F23
Chromosome8 (Build37)
Map Location 118,592,938 - 118,727,310
singlet/doubletdoublet
Overlap genenone
Upstream geneWwox, Maf
Downstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263F23.T7 (MSMg01no263_f23.b1)MSMg01-263F23.TJ (MSMg01no263_f23.g1)
ACCAG405214AG405215
length747719
length of high quality
(start - end)		326 (47 - 372)287 (84 - 370)
definitionCHROMAT_FILE: MSMg01no263_f23.b1 PHD_FILE: MSMg01no263_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:16 2005CHROMAT_FILE: MSMg01no263_f23.g1 PHD_FILE: MSMg01no263_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,592,938 - 118,593,259)(118,727,024 - 118,727,310)
sequence
CTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGACTATCCCAGAGATGAAATTAGGAGCTAAGGGATGTTCTTGT
GAACAAAGGCTAGAAGGAAATGGGTGAGGGACAGTGAGTCACACGACCCT
CTCCCTCAGTCCAGTCACCTGTTCCAGTGTTCCACCACAGGACATCATTG
ACAGCCATATTTCTGTTTCCCCATATGTGAAAACATGAGGCAAAAAACAT
TCAAAAACACCTGGAGAGTTTGAAATAATTAACTTGAGACATTGTTTGCG
AGGGCATTTGTATGTTTCCTGGCATGTTATATGAATATGTGTTTAAAGAA
CCCTGGGTATGATTATTACTGTTATTATCTTTGCACCACCCTATATAATT
AGAGGTAATGTAGCCTTTATTCTAACACACAGATAAAAATAAATAAAGGG
ATGGTTTGAAAGGGGAAGTGGTGCTTAAGCCGAATTTTAAAAATAATCAG
ACAGAGGGAAGGCTCTAAACTCAAATAGTAAGTTCTAATTAGCCTGATTG
GATCAGATGTGCACGTGTATCAAAGCATCATGCCAGGCCCCATAAACATG
TACAATTATCATAATAACACTTAACTTATAAAGTGCTTCGCTGGGCATTT
GCTTTCTGTCCCTACCATGGTGTAGCTTGTTGTCCTGTTGAACACCTCTG
CAGGGGAAGTGTGCCGTAATAGGAAGTCCTTATAAAAGCTATTTTAN

NNTTCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAGTGGAACGCA
TAAATTACTCTAAAGACACAGAGTTTATCTTAAACATTAACTACGAAGGG
TGAATTAATAAGACTATTATAAAACCATTAGCATCCAGTGTATTTACCTA
CAACCACAGTGTACCCCAACCAACATCAACCCATAGCTGCTGTTCATGTT
GGGTGCTCAAACTAGTGTGTTTTAGCTTGCAATTCACTTAAACTTATAAC
ATTATCTTTAAATATATATTTAAATATCAATATATTACATAATTATAAGT
GTATAATATATAAATTATGTAGAATGAACATCACACGCATATATTTACAT
GTTTAAATGTATATATATTCCATTAACTTTCTTTATTTTCAGGGGTTTTC
TCAGATGCTCTTGGTTCCTAACTTAGCAGTGCAACTCTATCCAAAATTAT
GATACCTGAAAGTCTCTAAATATGACCATTAATCTCTAAAAGTTAGAGAT
GAAGAGGCTGAGCTGTAATCAGGTAAAATGGAGAGAGCCACATGGGGGCT
CCTGAGGAGCCCCACAGGGGCTCCTGCAGAGTCAGCTGTAGAGAGGGGAA
CAAAAACAATTCAAAGGAGGGGCATTTAGGGACTTTGCAGTGGCCCGAAA
GCTCAGGGTGACTTTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_f23.b1 MSMg01no263_f23.b1 CHROMAT_FILE:
MSMg01no263_f23.b1 PHD_FILE: MSMg01no263_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:16 2005
         (326 letters)



>mm_chr8_118592735_118593460
          Length = 726

 Score =  615 bits (318), Expect = e-180
 Identities = 321/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgactatcccagagatgaaattaggagctaagggatgttcttgtgaacaaagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgactatcccagagatgaaattaggagctaagggatgttcttgtgaacaaagg 263

                                                                       
Query: 64  ctagaaggaaatgggtgagggacagtgagtcacacgaccctctccctcagtccagtcacc 123
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 264 ctagaaggaaatgggtgagggacagtgggtcacacgaccctctccctcagtccagtcacc 323

                                                                       
Query: 124 tgttccagtgttccaccacaggacatcattgacagccatatttctgtttccccatatgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgttccagtgttccaccacaggacatcattgacagccatatttctgtttccccatatgtg 383

                                                                       
Query: 184 aaaacatgaggcaaaaaacattcaaaaacacctggagagtttgaaataattaacttgaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacatgaggcaaaaaacattcaaaaacacctggagagtttgaaataattaacttgaga 443

                                                                       
Query: 244 cattgtttgcgagggcatttgtatgtttcctggcatgttatatgaatatgtgtttaaaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cattgtttgcgagggcatttgtatgtttcctggcatgttatatgaatatgtgtttaaaga 503

                                 
Query: 304 accctgggtatgattattactg 325
           ||||||||||||||||||||||
Sbjct: 504 accctgggtatgattattactg 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_f23.g1 MSMg01no263_f23.g1 CHROMAT_FILE:
MSMg01no263_f23.g1 PHD_FILE: MSMg01no263_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:16 2005
         (287 letters)



>mm_chr8_118726888_118727574
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaaagtggaacgcataaattactctaaagacacagagtttatcttaaacattaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tctaaaagtggaacgcataaattactctaaagacacagagtttatcttaaacattaacta 364

                                                                       
Query: 61  cgaagggtgaattaataagactattataaaaccattagcatccagtgtatttacctacaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 363 cgaagggtgaattaataagactattataaaaccattagcattcagtgtatttacctacaa 304

                                                                       
Query: 121 ccacagtgtaccccaaccaacatcaacccatagctgctgttcatgttgggtgctcaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccacagtgtaccccaaccaacatcaacccatagctgctgttcatgttgggtgctcaaact 244

                                                                       
Query: 181 agtgtgttttagcttgcaattcacttaaacttataacattatctttaaatatatatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgtgttttagcttgcaattcacttaaacttataacattatctttaaatatatatttaa 184

                                                          
Query: 241 atatcaatatattacataattataagtgtataatatataaattatgt 287
           ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 183 atatcaatatattacataattataagtatataatatataaattatgt 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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