BAC Information

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BAC

Clone NameMSMg01-263I10
Chromosome8 (Build37)
Map Location 124,923,033 - 125,090,871
singlet/doubletdoublet
Overlap gene5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2
Downstream geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263I10.T7 (MSMg01no263_i10.b1)MSMg01-263I10.TJ (MSMg01no263_i10.g1)
ACCAG405322AG405323
length734760
length of high quality
(start - end)		566 (49 - 614)286 (82 - 367)
definitionCHROMAT_FILE: MSMg01no263_i10.b1 PHD_FILE: MSMg01no263_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:28 2005CHROMAT_FILE: MSMg01no263_i10.g1 PHD_FILE: MSMg01no263_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,090,416 - 125,090,871)(124,923,033 - 124,923,317)
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGGTTTGCCCCAGTGACAAGACAAAGCCAGCTGCCTCCTGG
TCGAAGCTGATTAGATAAGTGACACCTGGCTGAGCTAATCCGATGTTCTA
GGACCAGAGAGTGCTCTGGTATACTAGTGATCCCCCATAATGTAAGACAG
CAAGCAAACAGGAAGTTCCAGAGGCATCAAGCCTAACACAGCCGCTTGAG
CGTTTGGGAATAGAGTCCCTTTCTTTGATATTTGCAGCCATGAGGAATGC
GGCCCATGCCTCTGGGCATGCCCATGAGGGATTTTCTAGTTGAGGCTAAT
TAAAGTGGGAAGACACACCCTAATTTGCATGCCACTATTCCATGGGCTGG
GAATTAATTTCCCTGACCGACATTAATAAAAAAGGAGAAAAGGCATAGGT
GTGGAAACCTGGCAGCTCACACGTGTGACTGTAGCACTTCAGAGGCTTAG
GGAGGAGACTCAAGTTCTACTCTGGTCTGGGAATACATGAAACCCTGTCA
AATGACTTTGAACTAGTCCAGGCAGTGGTCTGGGCAAACCTTTAATCTCA
GCTCTTGAGAGGCAGAGGCAGGTGGCTCTCTGAGTTCGAAGCCAGTCTGG
TCTACAGAGTTTAAGTTACTGGACAGCCAGGGGCTACACAGATAAACTGT
ATCTCAGAAATAATTAAAATTTTATAAATCTTTG

NNCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGTCCCGAGAGATGTC
AGAGACACAACGTAAGGAGCCTCTGCTCGCCCTGCCCCATTCGTGCCCTG
CCAGTCGCCAGTGCAAGTGCCCAGGGCACTGTCTCCCTCCGTACTCTGAA
TTTTGTGGAGGACCCTTTAGTTCCATGCTGGGAGGCTGCCTCTGAGGTAC
ACTCCTGAAGTTCCTACAGGCTTGGCGCAGTCTGAACCTTTGTCTCCTTA
CCTCTTCCTCAGCTGCTTGGGGAACGAGGTTTTATGAAAAACATTTATGT
TATATGTGTATGTATCTTTTTTAGGCTGACCCACCCCATTGGATCTAGAG
CTGGGGTTCCTGGCTGTTTGACCCCCCCAAACAAAAAAGATAACTAAACT
GTGATCTCTGGAATCGCATCAAACAAGGGCTCTTAGCACTGAGCCATCTC
TTCCGTCCCTTTCTCAGACATTTAATGCTGGTCTTTTTTTTTTTAAATCT
CAATAGTGCTATTGAATGGTGGTTCACACCCTTTAATCCCATCACTATTT
ACGCTTAGTTAGCCTGCATTTTTACTTTATTCGTCAGTCTTACCGCTACA
TTTATTTTTCCACTTATTTGCCACGTTTTTTTATATAGACAATTTTTATC
TTTTTATAAAATTTCTACGTACATTTTCCCCCTTTCACTTTTATCTATTT
TCTTGCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_i10.b1 MSMg01no263_i10.b1 CHROMAT_FILE:
MSMg01no263_i10.b1 PHD_FILE: MSMg01no263_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:28 2005
         (566 letters)



>mm_chr8_125090416_125091381
          Length = 966

 Score =  820 bits (424), Expect = 0.0
 Identities = 448/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttggtttgccccagtgacaagacaaagccagctgcctcctggtcgaagctgat 63
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 456 ggaattcttggtttggcccagtgacaagacaaagccagctgcctcctgatcgaagctgat 397

                                                                       
Query: 64  tagataagtgacacctggctgagctaatccgatgttctaggaccagagagtgctctggta 123
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 396 tagataagtgacacatggctgagctaatccgatgttctaggatcagagagtgctctggta 337

                                                                       
Query: 124 tactagtgatcccccataatgtaagacagcaagcaaacaggaagttccagaggcatcaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tactagtgatcccccataatgtaagacagcaagcaaacaggaagttccagaggcatcaag 277

                                                                       
Query: 184 cctaacacagccgcttgagcgtttgggaatagagtccctttctttgatatttgcagccat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cctaacacagccgcttgagcgtttgggaatagagtccctttctttgatatttgcagccat 217

                                                                       
Query: 244 gaggaatgcggcccatgcctctgggcatgcccatgagggattttctagttgaggctaatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaggaatgcggcccatgcctctgggcatgcccatgagggattttctagttgaggctaatt 157

                                                                       
Query: 304 aaagtgggaagacacaccctaatttgcatgccactattccatgggctgggaattaatttc 363
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 156 aaagtgggaagacacaccctaatttggatgccactattccatgggctgggaattaatttc 97

                                                                       
Query: 364 cctgaccgacattaataaaaaaggagaaaaggcataggtgtggaaacctggcagctcaca 423
           |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 96  cctgactgaaattaataaaaaaggagaaaaggcataggtgtggaaacctggtagctcaca 37

                                               
Query: 424 cgtgtgactgtagcacttcagaggcttagggaggag 459
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  cgtgtgactgtagcacttcagaggcttagggaggag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no263_i10.g1 MSMg01no263_i10.g1 CHROMAT_FILE:
MSMg01no263_i10.g1 PHD_FILE: MSMg01no263_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:28 2005
         (286 letters)



>mm_chr8_124922833_124923518
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgagtcccgagagatgtcagagacacaacgtaaggagcctctgctcgccctgccccatt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tcgagtcccgagagatgtcagagacacaacgtaaggagcctctgcttgccctgccccatt 260

                                                                       
Query: 61  cgtgccctgccagtcgccagtgcaagtgcccagggcactgtctccctccgtactctgaat 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgccctgccagttgccagtgcaagtgcccagggcactgtctccctccgtactctgaat 320

                                                                       
Query: 121 tttgtggaggaccctttagttccatgctgggaggctgcctctgaggtacactcctgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtggaggaccctttagttccatgctgggaggctgcctctgaggtacactcctgaagt 380

                                                                       
Query: 181 tcctacaggcttggcgcagtctgaacctttgtctccttacctcttcctcagctgcttggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctacaggcttggcgcagtctgaacctttgtctccttacctcttcctcagctgcttggg 440

                                                        
Query: 241 gaacgaggttttatgaaaaacatttatgttatatgtgtatgtatc 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacgaggttttatgaaaaacatttatgttatatgtgtatgtatc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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