BAC Information

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BAC

Clone NameMSMg01-263M04
Chromosome8 (Build37)
Map Location 68,447,848 - 68,448,139
singlet/doubletsinglet
Overlap geneMarch1
Upstream gene3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263M04.T7 (MSMg01no263_m04.b1)MSMg01-263M04.TJ (MSMg01no263_m04.g1)
ACCAG405494AG405495
length748724
length of high quality
(start - end)
316 (52 - 367)292 (86 - 377)
definitionCHROMAT_FILE: MSMg01no263_m04.b1 PHD_FILE: MSMg01no263_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:46 2005CHROMAT_FILE: MSMg01no263_m04.g1 PHD_FILE: MSMg01no263_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTAGCTCTGAGACCCATTTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GGCCTTTTTGTTTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAA
TTTTATGAGGTCCCATTTGTTGATTCTCAATCTTACAGCACAAGCCATTG
CTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGGTTTTC
CCTACTTTCTCCTCTATATGTTTCAGCGCCTCCGCCTTTATGTGGAGTTC
CTTAATCCACTTAGATTTGACCCCACCATAAGGAGATAGGAATGGATCAA
TTCGCATTCTTCTACATGATAACTGCCAGTTGTGCTAGCACCATTTGTTG
AAAATGCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATCTTG
TGACCATAGGTGTGTTGGTTTAATTTCAGCTTTTTAACCTTTTTTTCATT
TTGCATTAAAGTTACTATTTATTTTGTTTTTTCTTCATCTCTTATCATCC
TCTCTTTCTCCCTTATTTTTTTTTATGGCACCTCTCACCTGCATCTTATC
TCTTGGTTTTATTTTTTTTTACTTCTCTTTCTCTTCTCTCTTTTGTTC
NNNNAAATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTCTCATTAGA
AATAAAAGAAAATGAGTAGGGTCATGGAATATTTGGGGAGAGAATCTCTA
AAGGCTTTTGTTATTTTCTGTAATTTCTCTCTTGACCTGCTATGGTGAAC
ATTTATTTCTCTGCAATTCAATATTGGGGTAGGATACAGACACTCAGAGA
TACTGGTATCTCTGTGTGGCAAATCCTTGTAATCATCCCAAGGTTCACAC
CCAAACTCCTTTTGGTAGAAACATGGAAATTTTGGTTGCTTGGAGTGGAA
ATGAGAGGCTGAGAACCTGCCTGCCCTGTGGCATAACGAGGTGGCAGAAT
CCAGGATCATGCCTTCTCTAGGCTACAACCCCTTGTGTCTTGGTCCTTTA
ATTCATAAAATTTCATGACTCAAATATAAATGTAAGGATAAAATTACTAG
GACAATCAGAGTGAATTAACCTGAAGATGGTATGCATGAACTTAGCGTCT
GAGCAAGGATCCTAGTATAATGTGTGGACACAGTATCTGAAGCTGTGTAG
GTGTGATTTCTTTCATCTGAGCTGTTGCCCTAATTGATTTGGCATGAAGT
ACCCCTCTGTGTCTCAGTTATTTTGCTTTTTCCCCATACGCTTCCTTTAC
GATTGCCCCTGTTTCATCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_m04.g1 MSMg01no263_m04.g1 CHROMAT_FILE:
MSMg01no263_m04.g1 PHD_FILE: MSMg01no263_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:46 2005
         (292 letters)



>mm_chr8_68447648_68448339
          Length = 692

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttattctcattagaaataaaagaaaatgagtagggtcatggaatatttggggagagaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 tttattctcattagaaataaaagaaaatgagtagggtcatggaatatttgggaagagaat 260

                                                                       
Query: 61  ctctaaaggcttttgttattttctgtaatttctctcttgacctgctatggtgaacattta 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctaaaagcttttgttattttctgtaatttctctcttgacctgctatggtgaacattta 320

                                                                       
Query: 121 tttctctgcaattcaatattggggtaggatacagacactcagagatactggtatctctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctctgcaattcaatattggggtaggatacagacactcagagatactggtatctctgt 380

                                                                       
Query: 181 gtggcaaatccttgtaatcatcccaaggttcacacccaaactccttttggtagaaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggcaaatccttgtaatcatcccaaggttcacacccaaactccttttggtagaaacatg 440

                                                               
Query: 241 gaaattttggttgcttggagtggaaatgagaggctgagaacctgcctgccct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattttggttgcttggagtggaaatgagaggctgagaacctgcctgccct 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)